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Type: Article
Published: 2022-03-25
Page range: 283-288
Abstract views: 270
PDF downloaded: 168

Mitogenomic features of three species of Entomobryoidea (Collembola) from China

Natural History Research Center, Shanghai Natural History Museum, Shanghai Science & Technology Museum, Shanghai, 200041, China.
Department of Entomology, College of Plant Protection, Nanjing Agricultural University, 210095, Nanjing, China.
Department of Entomology, College of Plant Protection, Nanjing Agricultural University, 210095, Nanjing, China.
Department of Entomology, College of Plant Protection, Nanjing Agricultural University, 210095, Nanjing, China.
Collembola Entomobryinae Orchesellidae de novo assembly mitochondrial soil fauna

Abstract

Three novel mitogenomes of Entomobryoidea were assembled and annotated. Sequences final lengths were 14,683 bp for Alloscopus bannaensis, 14,884 bp for Sinhomidia bicolor, and 14,794 bp for Coecobrya sp., including 13 PCGs, 22 tRNA, and 2 rRNA genes. To confirm the morphological identifications, maximum likelihood and Bayesian analyses were performed and the species were placed in the correct phylogenetic position, except A. bannaensis which support value was low to confirm its placement. All three mitogenomes are the first ones published for these genera, the genetic data generated here will be useful for further phylogenetic analyses of the group Collembola.

 

References

  1. Bellini, B.C., Cipola, N.G. & Godeiro, N.N. (2015) New species of Lepidocyrtus Bourlet and Entomobrya Rondani (Collembola: Entomobryoidea: Entomobryidae) from Brazil. Zootaxa 4027, 227–242. https://doi.org/10.11646/zootaxa.4027.2.3
    Bellini, B.C., Santos, N.M.C., Souza, P.G.C. & Weiner, W.M. (2018) Two new species of Brazilian springtails (Hexapoda: Collembola) with comments on Neotropical Brachystomella Ågren and Seira (Lepidocyrtinus) Börner. Insect Systematics and Evolution 1–30. https://doi.org/10.1163/1876312X-00002192
    Bellinger, P.F., Christiansen, K.A. & Janssens, F. (1996–2021) Checklist of the Collembola of the World. Available from: http:// www.collembola.org (accessed 10 January 2022)
    Börner, C. (1906) Das System der Collembolen nebst Beschreibung neuer Collembolen des Hamburger Naturhistorischen Museums. Mitteilungen aus den Naturhistorischen Museum in Hamburg 23, 147–188.
    Brook, G. (1882) On a new genus of Collembola (Sinella) allied to Degeeria Nicolet. Journal of the Linnean Society of London (Zoology) 16, 541–545. https://doi.org/10.1111/j.1096-3642.1882.tb02398.x
    Carapelli, A., Convey, P., Nardi, F. & Frati, F. (2014) The mitochondrial genome of the antarctic springtail Folsomotoma octooculata (Hexapoda: Collembola), and an update on the phylogeny of the collembolan lineages based on mitogenomic data. Entomologia 2, 46–55. https://doi.org/10.4081/entomologia.2014.190
    Cucini, C., Fanciulli, P.P., Frati, F., Convey, P., Nardi, F. & Carapelli, A. (2020) Re-Evaluating the internal phylogenetic relationships of Collembola by means of mitogenome data. Genes 12. https://doi.org/10.3390/genes12010044
    Denis, J.R. (1929) Sur deux Collemboles de Madagascar. Bulletin du Muséum 1, 104–106.
    Dierckxsens, N., Mardulyn, P. & Smits, G. (2020) Unraveling heteroplasmy patterns with NOVOPlasty. NAR Genomics and Bioinformatics 2. https://doi.org/10.1093/nargab/lqz011
    Godeiro, N.N., Pacheco, G., Liu, S., Cipola, N.G., Berbel-filho, W.M., Zhang, F., Gilbert, M.T.P. & Bellini, B.C. (2020) Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes. Zoologica Scripta 49, 329–339. https://doi.org/10.1111/zsc.12408
    Godeiro, N.N., Bellini, B.C., Ding, N., Xu, C., Ding, Y. & Zhang, F. (2021) A mitogenomic phylogeny of the Entomobryoidea (Collembola): A comparative perspective. Zoologica scripta 50, 658–666. https://doi.org/10.1111/zsc.12487
    Handschin, E. (1925) Beiträge zur Collembolenfauna der Sundainseln. Treubia 6, 225–270. https://doi.org/10.1002/mmnd.48019250305
    Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q. & Vinh, L.S. (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular biology and evolution 35, 518–522. https://doi.org/10.1093/molbev/msx281
    Lartillot, N., Rodrigues, N., Stubbs, D. & Richer, J. (2013) PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment. Systematic biology 62, 611–615. https://doi.org/10.1093/sysbio/syt022
    Linnaeus, C. (1767) Systema naturae, per regna tria naturae, secundum classes, ordines, genera, species, cum caracteribus, differentiis, synonymis, locis. Tom. I. Pars II. Editio Duodecima Reformata. Stockholm, Sweden: Laurenti Salvii, 533‒1327. https://doi.org/10.5962/bhl.title.156772
    MacGillivray, A. (1896) The american species of Isotoma. The Canadian Entomologist 28(2), 47–58. https://doi.org/10.4039/Ent2847-2
    Meng, G., Li, Y., Yang, C. & Liu, S. (2019) MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic acids research, 1–7. https://doi.org/10.1093/nar/gkz173
    Minh, B.Q., Schmidt, H.A., Chernomor, O., Schrempf, D., Woodhams, M.D., von Haeseler, A. & Lanfear, R. (2020) IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era. Molecular biology and evolution 37, 1530–1534. https://doi.org/10.1093/molbev/msaa015
    Nunes, R.C., Godeiro, N.N., Pacheco, G., Liu, S., Gilbert, M.T.P., Valin, F.A., Zhang, F. & Bellini, B.C. (2019) The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position. Zoologica Scripta 48, 783–800. https://doi.org/10.1111/zsc.12377
    Reumont von, B.M., Jenner, R.A., Wills, M.A., Dell’Ampio, E., Pass, G., Ebersberger, I., Meyer, B., Koenemann, S., Iliffe, T.M., Stamatakis, A., Niehuis, O., Meusemann, K. & Misof, B. (2012) Pancrustacean phylogeny in the light of new phylogenomic data: Support for remipedia as the possible sister group of hexapoda. Molecular Biology and Evolution 29, 1031–1045. https://doi.org/10.1093/molbev/msr270
    Sun, X., Yu, D., Xie, Z., Dong, J., Ding, Y., Yao, H. & Greenslade, P. (2020) Phylomitogenomic analyses on collembolan higher taxa with enhanced taxon sampling and discussion on method selection. PlosOne 15, 1–21. https://doi.org/10.1371/journal.pone.0230827
    Wang, F., Chen, J. & Christiansen, K. (2002) A new species of the subgenus Coecobrya (Collembola: Entomobryidae) from China. Journal of Entomological Science 37, 213–218. https://doi.org/10.18474/0749-8004-37.3.213
    Wray, D. L. (1953) Some new species of springtail insects (Collembola). Nature Notes, Occasional Papers 1, 1–7.
    Yosii, R. (1956) Hohlencollembolen Japans II. Japanese Journal of Zoology 11, 609–627.
    Yosii, R. (1965) On some Collembola of Japan and adjacent countries. Contributions from the Biological Laboratory Kyoto University 19, 1–71.
    Zhang, F., Deharveng, L., Greenslade, P. & Chen, J. (2009) Revision of Acanthocyrtus (Collembola: Entomobryidae), with description of a new genus from eastern Asia. Zoological Journal of the Linnean Society 157, 495–514. https://doi.org/10.1111/j.1096-3642.2008.00521.x
    Zhang, F., Ma, Y. & Greenslade, P. (2017) New Australian Paronellidae (Collembola) reveal anomalies in existing tribal diagnoses. Invertebrate Systematics 31, 375–393. https://doi.org/10.1071/IS16073
    Zhang, F., Bellini, B.C. & Soto-Adames, F.N. (2019) New insights into the systematics of Entomobryoidea (Collembola: Entomobryomorpha): first instar chaetotaxy, homology and classification. Zoological Systematics 44, 249–278. https://doi.org/10.11865/zs.201926
    Zhang, F., Cipola, N.G., Pan, Z. & Ding, Y. (2020) New insight into the systematics of Heteromurini (Collembola: Entomobryidae: Heteromurinae) with special reference to Alloscopus and Sinodicranocentrus gen. n. Arthropod Systematics and Phylogeny 78, 1–16.
    https://doi.org/10.26049/ASP78-1-2020-01