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Type: Articles
Published: 2012-10-11
Page range: 43–69
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DNA barcodes reveal cryptic genetic diversity within the blackfly subgenus Trichodagmia Enderlein (Diptera: Simuliidae: Simulium) and related taxa in the New World

Biodiversity Institute of Ontario, Barcoding of Life Laboratory, University of Guelph, Guelph, Ontario N1G 2W1, Canada
Fiocruz, Fundação Oswaldo Cruz, R. Teresina, 476 – Adrianópolis, Manaus - AM, 69057-070, Brazil
The Natural History Museum, Department of Entomology, DC II, Cromwell Road, London, UK
CMM-Centre for Infection, St George’s, University of London, Cranmer Terrace, Tooting, London SW17 0RE, UK
The Natural History Museum, Department of Entomology, DC II, Cromwell Road, London, UK
The Natural History Museum, Department of Entomology, DC II, Cromwell Road, London, UK
Biodiversity Institute of Ontario, Barcoding of Life Laboratory, University of Guelph, Guelph, Ontario N1G 2W1, Canada
London School of Tropical Medicine and Hygiene, Disease Control Department, Keppel Street, London WC1E 7HT, UK
Biodiversity Institute of Ontario, Barcoding of Life Laboratory, University of Guelph, Guelph, Ontario N1G 2W1, Canada
Biodiversity Institute of Ontario, Barcoding of Life Laboratory, University of Guelph, Guelph, Ontario N1G 2W1, Canada
Diptera Simuliidae Blackflies DNA Barcoding Cryptic diversity

Abstract

In this paper we investigate the utility of the COI DNA barcoding region for species identification and for revealing hidden diversity within the subgenus Trichodagmia and related taxa in the New World. In total, 24 morphospecies within the current expanded taxonomic concept of Trichodagmia were analyzed. Three species in the subgenus Aspathia and 10 species in the subgenus Simulium s.str. were also included in the analysis because of their putative phylogenetic relationship with Trichodagmia. In the Neighbour Joining analysis tree (NJ) derived from the DNA barcodes most of the specimens grouped together according to species or species groups as recognized by other morphotaxonomic studies. The interspecific genetic divergence averaged 11.2% (range 2.8–19.5%), whereas intraspecific genetic divergence within morphologically distinct species averaged 0.5% (range 0–1.2%). Higher values of genetic divergence (3.2–3.7%) in species complexes suggest the presence of cryptic diversity. The existence of well defined groups within S. piperi, S. duodenicornium, S. canadense and S. rostratum indicate the possible presence of cryptic species within these taxa. Also, the suspected presence of a sibling species in S. tarsatum and S. paynei is supported. DNA barcodes also showed that specimens from species that were taxonomically difficult to delimit such as S. hippovorum, S. rubrithorax, S. paynei, and other related taxa (S. solarii), grouped together in the NJ analysis, confirming the validity of their species status. The recovery of partial barcodes from specimens in collections was time consuming and PCR success was low from specimens more than 10 years old. However, when a sequence was obtained, it provided good resolution for species identification. Larvae preserved in ‘weak’ Carnoy’s solution (9:1 ethanol:acetic acid) provided full DNA barcodes. Adding legs directly to the PCR mix from recently collected and preserved adults was an inexpensive, fast methodology to obtain full barcodes. In summary, DNA barcoding combined with a sound morphotaxonomic framework provides an effective approach for the delineation of species and for the discovery of hidden diversity in the subgenus Trichodagmia.

References

  1. Abascal, F., Posada, D., Knight, R.D. & Zardoya, R. (2006) Parallel evolution of the genetic code in arthropod mitochondrial genomes. Public Library of Science Biology, 4, 0711–0718.

    Adler, P.H., Cheke, R.A. & Post, R.J. (2010) Evolution, epidemiology, and population genetics of black flies Diptera: Simuliidae). Infection, Genetics and Evolution, 10, 846–865.

    Adler, P.H., Currie, D.C. & Wood, D.M. (2004) The Black flies (Simuliidae) of North America. Cornell University Press, Ithaca, New York, 941 pp.

    Adler, P.H. & Crosskey, R.W. (2010) World blackflies Diptera: Simuliidae. a comprehensive revision of the taxonomic and geographical inventory. Available from http://entweb. clemson.edu/biomia/pdfs/blackflyinventory.pdf./112 pp. [last accessed 27.February.2012].

    Adler, P.H. & Crosskey, R.W. (2011) World blackflies Diptera: Simuliidae. a comprehensive revision of the taxonomic and geographical inventory. Available from http://entweb. clemson.edu/biomia/ pdfs/blackflyinventory.pdf./112 pp. [last accessed 27.February.2012].

    Adler, P.H. & Crosskey, R.W. (2012) World blackflies Diptera: Simuliidae. a comprehensive revision of the taxonomic and geographical inventory. Available from http://entweb. clemson.edu/biomia/ pdfs/blackflyinventory.pdf./119 pp. [last accessed 27.April.2012].

    Agatsuma, T., Hirai, H., Ochoa, J.O. & Tada. I. (1993) Typing of Simulium using mitochondrial DNA PCR products with restriction endonuclease digestion. Annals of Tropical Medicine and Parasitology, 87, 307–309.

    Ahrens, D., Monaghan, M.T. & Vogler, A.P. (2007) DNA-based taxonomy for associating adults and larvae in multi-species assemblages of chafers (Coleoptera: Scarabidae). Molecular Phylogeny and Evolution, 44, 436–449.

    Alcaide, M., Rico, C., Ruiz, S., Soriguer, R., Muñoz, J. & Figuerola, J. (2009) Disentangling vector-borne transmission networks: A universal DNA barcoding method to identify vertebrate hosts from arthropods bloodmeals. PLoS ONE, 9, 1–6.

    Allen, U. (2009) DNA Barcodes to aid in monitoring illegal trade of wildlife products. VetMed Resources Available in http://www.cabi.org/vetmedresource. [last accessed 16.October. 2010].

    Borisenko, A.V., Lim, B.K., Ivanova, N.V., Hanner, R.H. & Hebert, P.D.N. (2007) DNA barcoding in surveys of small mammal communities: a field study in Suriname. Molecular Ecology Resources, 8, 471–479.

    Bourlat, S.J., Nakano, H., Åkerman, M., Telford, M.J., Thorndyke, M.C. & Obst, M. (2008) Feeding ecology of Xenoturbella bocki (phylum Xenoturbellida) revealed by genetic barcoding. Molecular Ecology and Resources, 8, 18–22.

    Brockhouse, C.L, Vajime, C.G., Marin, R. & Tanguay, R.M. (1993) Molecular identification of onchocerciasis vectors of sibling species in black flies (Diptera: Simuliidae). Biochemical and Biophysical Resources Communications, 194, 628–634.

    Burns, J.M., Hanzen, D.J., Hajibabei, M. & Hallwachs, W. (2010) Of many similar species in the Neotropical genus Porphyrogenes Lepidoptera: Hesperidae), a new one, repeatedly reared in Costa Rica, is relatively distinct. Proceedings of the Entomological Society of Washington, 112, 32–42.

    Burns, J.M., Hanzen, D.J., Hajibabei, M., Hallwachs, W. & Hebert, P.D.N. (2007) DNA barcodes of closely related (but morphologically and ecologically distinct) species of skipper butterflies (Hesperidae) can differ in only one to three nucleotides. Journal of Tropical Lepidoptera, 61, 138–153.

    Burns, J.M., Hanzen, D.J., Hajibabei, M., Hallwachs, W. & Hebert, P.D.N. (2008) DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservación Guanacaste, Costa Rica. Proceeding of the Natural Academy of Science, 105, 6350–6355.

    Burns, J.M., Hanzen, D.J., Hallwachs ,W., Hajibabei, M. & Hebert, P.D.N. (2009) Genitalia, DNA barcodes, and life histories synonymized Telles with Thracides- a genus in which Telles arcalaus looks out of place (Hesperidae: Hesperinae). Journal of Tropical Lepidoptera, 63, 141–153.

    Charalambous, M., Shelley, A.J., Maia-Herzog, M. & Luna Dias, A.P.A. (1996) Four new cytotypes of the onchocerciasis vector blackfly Simulium guianense in Brazil. Medical Veterinary and Entomology, 10, 111–120.

    Clare, E.L., Burton, K.L., Engstrom, D.M., Eger, J.L. & Hebert, P.D.N. (2007) DNA barcoding of Neotropical bats: species identification and discovery in Guyana. Molecular Ecology Resources, 7, 1784–190.

    Conflitti, I., Kratochvil, M.J., Spironello, M., Shield, G.F. & Currie, D.C. (2010) Good species behaving badly: Non-monophyly of black fly sibling species in the Simulium arcticum complex Diptera: Simuliidae). Molecular Phylogeny and Evolution, 57, 245–257.

    Conflitti, I.M, Shields, G.F. & Currie, D.C. (2012) A “complex” problem: delimiting sibling species boundaries in black flies (Diptera: Simuliidae). Canadian Entomologist, 144, 323–336.

    Conn, J. (1988) A cytological study of the Simulium metallicum complex Diptera: Simuliidae) from Central and South America. PhD thesis, University of Toronto, Toronto, Ontario, Canada: 229pp.

    Conn, J., Rothfels, K.H., Procunier, W.S., Hirai, H. (1989) The Simulium metallicum species complex Diptera: Simuliidae) in Latin America: a cytological study. Canadian Journal of Zoology, 67, 1217–1245.

    Cox, A.J. & Hebert, P.D.N. (2001) Colonization, extinction and phylogeographic patterning in a freshwater crustacean. Molecular Ecology, 10, 371–386.

    Crosskey, R.W. (1990) The Natural History of Blackflies. John Wiley & Sons, Chicester, ix+711pp.

    Cywinska, A., Hunter, F.F. & Hebert, P.D.N. (2006) Identifying Canadian mosquitoes species through DNA barcodes. Medical Veterinary and Entomology, 20, 413–24.

    Day, J.C., Goodall, T.I. & Post, R.J. (2008) Confirmation of the species status of the blackfly Simulium galeratum in Britain using molecular taxonomy. Medical Veterinary and Entomology, 22, 55–61.

    Day, J. C., Mabintu, M. & Post, R.J. (2010) The subgenus Eusimulium Diptera: Simuliidae: Simulium) in Britain. Aquatic Insects, 32, 281–292.

    Dawney, N., Ogden, R., Mcewing, R., Carvalho, G.R. & Thorpe, R.S. (2007) Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Science International, 173, 1–6.

    Dean, M.D. & Ballard, J.W. (2001) Factors affecting mitochondrial DNA quality from museum preserved specimens. Entomologia Experimentalis et Applicata, 98, 279–283.

    DeSalle, R., Egan, M.G. & Siddall, M. (2005) The unholy trinity: taxonomy, species delimitation and DNA Barcoding. Philosophical Transactions of the Royal Society B, 360, 1905–1916.

    Dijkstra, P., Rubio, J.M. & Post, R. J. (2003) Resolving relationships over a wide taxonomic range in Delphacidae (Homoptera) using the COI gene. Systematic Entomology, 28, 89–100.

    Ebach, M. C. & Holdrege, C. (2005) DNA barcoding is not a substitute for taxonomy. Nature, 420, 461.

    Elias, M., Hill, R. I., Willmott, K. R., Dasmahapatra, K.K., Brower, A.V.Z., Mallet, J. & Jiggins, C.D. (2007) Limited performance of DNA barcoding in a diverse group of tropical butterflies. Proceedings of the Royal Society B, 274, 2881–2889.

    Emery, V.J., Landrey., J.-F. & Eckert, C.G. (2009) Combining DNA barcoding and morphological analysis to identify specialist floral parasites (Lepidoptera: Coleophoridae: Momphinae: Mompha). Molecular Ecology Resources, Special issue on Barcoding Life, supplement, 1, 217–223.

    Felsenstein, J. (2007) PHYLIP version 3.67 phylogenetic inference package. Available from http://www.evolution.genetics.washington.

    Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294–299.

    Godfray, H.C.J. (2002) Challenges for taxonomy. Nature, 417, 17–19.

    Golding, G.B., Hanner, R. & Hebert, P.D.N. (2009) Special issue on Barcoding Life. Molecular Ecology Resources, supplement, 1, 1–257.

    Hajibabaei, M., Shokralla, S., Zhou, X., Singer, G.A.C. & Baird, D.J. (2011) Environmental barcoding: A next generation sequencing approach for biomonitoring applications using river benthos. PLoS ONE, 6, 1–7.

    Hajibabaei, M., Singer, G.A.C., Hebert, P.D.N. & Hickey, D.A. (2007a) DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics, 4, 167–172.

    Hajibabaei, M., Singer, G.A.C., Clare, E.L. & Hebert, P.D.N. (2007b) Designs and applicability of DNA barcodes in biodiversity monitoring. BMC Biology, 5, 1–7.

    Hajibabaei, M., Smith, A.M., Janzen, D.J., Rodríguez, J.J., Whitefield, J.M. & Hebert, P.D.N. (2006a) A minimalist barcode can identify a specimen whose DNA is degraded. Molecular Ecological Notes, 6, 956–964.

    Hajibabaei, M., Janzen, D.J., Burns, J.M., Hallwachs, W. & Hebert, P.D.N. (2006b) DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of National Academy of Science, 4, 968–971.

    Hlaing, T., Tun-Lin, W., Somboon, P., Socheat, D., Setha, T., Min, S., Chang, M.S. & Walton, C. (2009) Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future genetic studies. BMC Genetics, 10, 1–12.

    Hamada, N., Pepinelli, M., Mattos-Glória, A. & Luz, S.L.B. (2010) A new black fly species from Brazil, closely related to Simulium guianense Wise Diptera, Simuliidae), revealed by morphology and DNA barcoding. Zootaxa, 2428, 22–36.

    Hebert, P.D.N. & Gregory, T.R. (2005) The promise of DNA barcoding for taxonomy. Systematic Entomology, 54, 852–859.

    Hebert, P.D.N., Cywinska, A., Ball, S.L. & DeWaard, J.R. (2003a) Biological identifications through DNA barcodes. Proceedings of the Royal Society, Biological Sciences, 270, 313–321.

    Hebert, P.D.N., Penton, E.H., Burns, J.M., Janzen, D.H. & Hallwachs, W. (2004) Ten species in one: DNA barcoding reveals cryptic species in the Neotropical skipper butterfly Astraptes fulgerator. – Proceedings of the National Academy of Science, 12, 14812–14817.

    Hebert, P.D.N., Ratnasingham, S. & DeWaard, J.R. (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society B: Biological Sciences, 270, S96–S99

    Hernández, L.M. (2007) Recommendations by The Natural History Museum on methods for collecting, preserving, rearing and mailing of simuliid specimens. Available from http://www.blackflies.info [last accessed 2.September.2010].

    Hernández, L.M. & Shelley, A.J. (2005) New specific synonymies and taxonomic notes on Neotropical blackflies (Diptera: Simuliidae). Zootaxa, 853, 1–46.

    Hernández, L.M. (2011) Systematics of the blackfly subgenus Trichodagmia Enderlein (Diptera: Simuliidae: Simulium) in the New World. PhD thesis, Wageningen University, Wöhrmann Printing Services, 546 pp.

    Hickerson, M.J., Meyer, C.P. & Moritz, C. (2006) DNA barcoding will often fail to discover new animal species over broad parameter space. Systematic Biology, 55, 729–739.

    Hoagland, E. (1995). The Taxonomic Impediment and the Convention on Biodiversity. Available from: http:// flyaqis.museum.vic. gov.au/chaec/taximp.html. [last accessed 2.November.2010]

    House of Lords (2002) What on Earth?: The Threat to the Science Underpinning Conservation. Select Committee on Science and Technology, third Report. H. L. Paper 118. HMSO, London.

    Hunter, S.J., Goodall, T.I., Walsh, K.A., Owen, R. & Day, J.C. (2008) Nondestructive DNA extraction from blackflies Diptera: Simuliidae): retaining voucher specimens from DNA barcoding projects. Molecular Ecology Resources, 8, 56–61.

    Ilmonen, J., Adler, P.H., Malqvist, B. & Cywinska, A. (2009) The Simulium vernum group Diptera: Simuliidae) in Europe: multiple character sets for assessing species status. Zoological Journal of the Linnaean Society, 155, 847–863.

    Ivanova, N.N., Zemlak, T.S., Hanner, R.H. & Hebert, P.D.N. (2007) Universal primers cocktails for fish barcoding. Molecular Ecology Resources, 7, 544–548.

    Janzen, D.H., Hajibabei, M., Burns, J.M., Hallwachs, W., Remigio, E. & Hebert, P.D.N. (2005) Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding. Transactions of the Royal Entomological Society B: Biological Sciences, 359, 1835–1846.

    Kerr, K.C.R., Stockle, M.Y., Dove, C.J., Weight, L.A., Francis, C.M. & Hebert, P.D.N. (2007) Comprehensive DNA barcode coverage of North American birds. Molecular Ecology Resources, 7, 535–543.

    Knölke, S., Erlacher, S., Hausmann, A., Miller, M. A. & Segerer, A. H. (2005) A procedure for combined genitalia and DNA extraction in Lepidoptera. Insect Systematics and Evolution, 35, 401–409.

    Knowlton, N. & Weigt, L.A. (1998) New dates and new rates for divergence across the Isthmus of Panama. Proceedings of the Royal Society of London B: Biological Sciences, 265, 2257–2263.

    Koch, D.A., Duncan, G.A., Parson, T.J., Pruess, K.P. & Powers, T.O. (1998) Effects of preservation methods, parasites, and gut contents of black flies Diptera: Simuliidae) on Polymerase Chain Reaction Products. Journal of Medical Entomology, 35, 313–318.

    Kramvis, A., Bukofzer, S. & Kew, M.C. (1996) Comparison of hepatitis B virus DNA extractions from serum by the QIAmp blood kit, GeneReleaser, and the phenol-chloroform method. Journal of Clinical Microbiology, 11, 2731–2733.

    Kress, W.J. & Erickson, D.I. (2008) DNA barcoding - a windfall for tropical biology. Biotropica, 40, 405–408.

    Krüger, A., Gelhaus, A. & Garms, R. (2000) Molecular identification and phylogeny of East African Simulium damnosum s.l. and their relationships with West African species of the complex (Diptera: Simuliidae). Insect Molecular Biology, 9, 101–108.

    Kumar, N.P., Rajavel, A.R., Natarajan, R. & Jambulinham, P. (2007) DNA Barcodes can distinguish species on Indian mosquitoes. Journal of Medical Entomology, 44, 1–7.

    Lane, N. (2009) On the origin of bar codes. Nature, 462, 8–10.

    Linton, Y.-M., Samanidou-Voyadjoglou, A. & Harbarch, R.E. (2002) Ribosomal ITS2 sequence data for Anopheles maculipennis and An. messeae in northern Greece, with a critical assessment of previously published sequences. Insect Molecular Biology, 11, 379–383.

    Lipscomb, N., Platnick, I. & Wheeler, Q.D. (2003) The intellectual content of taxonomy: a comment to DNA taxonomy. Trends in Ecology and Evolution, 18, 65–66.

    Maia-Herzog, M., Shelley, A.J., Luna Dias, A.P.A. & R. Malaguti (1984) Comparação entre Simulium brachycladum e S. rubrithorax, suas posições no subgénero Hemicnetha e notas sobre uma espécie proxima, S. scutistriatum (Diptera: Simuliidae). Memórias do Instituto Oswaldo Cruz, 79, 341–356.

    Mallet, J. & Willmot, K. (2003) Taxonomy: renaissance or Tower of Babel? Trends in Ecology and Evolution, 18, 57–59.

    Meusnier, I., Singer, G.A.C., Landry, J.-F., Hickey, D.A., Hebert, P.D.N & Hajibabaei, M. (2008) A universal DNA mini-barcode for biodiversity analysis. BMC Genomics, 9, 214.

    Meyer, C.P. & Paulay, G. (2005) DNA bar coding: error rates based on comprehensive sampling. PLoS Biology, 3, 2229–2238.

    Miller, S.E . (2007) DNA barcoding and the renaissance of taxonomy. Proceedings of the Natural Academy of Science USA, 104, 4775–4776.

    Monaghan, M.T., Balke, M., Gregory, T.R., Vogler, A.P. (2005) DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers. Philosophical Transactions of the Royal Society Biology, 360, 1925–1933.

    Moritz, C. & Cicero, C. (2004) DNA barcoding: promise and pitfalls. PLoS Biology, 2, 1529–1531.

    Moulton, J.K. (2000) Molecular sequence data resolve basal divergence within Simuliidae. Systematic Entomology, 25, 95–113.

    Moulton, J.K. (2003) Can the current molecular arsenal adequately track rapid divergence events within Simuliidae Diptera)? Molecular Phylogenetics and Evolution, 27, 45–57.

    Packer, L., Gibbs, J., Sheffields, C. & Hanner, R. (2009) DNA barcoding and the mediocrity of morphology. Molecular Ecology Resources, Special issue on Barcoding Life, supplement 1, 42–50.

    Page, R.D.M. (2001) TREEVIEW (Win32). Available from: http://taxonomy.zoology.gla.ac.uk/ rod/rod.html. [last accessed 24.November.2010].

    Pawlowski, J. & Lecroq, B. (2010) Short rDNA barcodes for species identification in Foraminifera. Journal of Eukaryotic Microbiology, 57, 197–205.

    Pepinelli, M., Hamada, N., Currie, D.C., Rivera, J., Grillet, M.E., Hebert, P.N.D. & Froehlich, C.G. (2009) DNA barcoding highlights issues with morphology-based taxonomy of Neotropical black flies Diptera: Simuliidae). Third International Barcode of Life Conference, 7–13, November 2009, Mexico City, Mexico [Pp. 91 of Abstract Volume available from: http://www.dnabarcodes.2009.org] [last accessed 8.August.2010].

    Post, R.J. (1980) Cytotaxonomy of the Simulium ornatum species-group in Britain. Newsletter of the British Simulium Group, 3, 3–5.

    Post, R.J. & Flook, P. (1992) DNA probes for the identification of members of the Simulium damnosum complex (Diptera: Simuliidae). Medical and Veterinary Entomology, 6, 379–384.

    Pramual, P., Kuvangkadilok, C., Baimai, V. & Walton, C. (2005) Phylogeography of the black fly Simulium tani Diptera: Simuliidae) from Thailand as inferred from mtDNA sequences. Molecular Ecology, 14, 3989–4001.

    Pramual, P., Wongpakam, K. & Adler, P.H. (2011) Cryptic biodiversity and phylogenetic relationships revealed by DNA barcoding of Oriental black flies in the subgenus Gomphostilbia (Diptera: Simuliidae). Genome, 54, 1–9.

    Pruess, K.P., Zhu, X. & Powers, T.O. (1992) Mitochondrial transfer RNA genes in black fly, Simulium vittatum (Diptera: Simuliidae), indicate long divergence from mosquito (Diptera: Culicidae) and fruit fly Diptera: Drosophilidae). Journal of Medical Entomology, 29, 644–651.

    Quicke, D.L.J., Belshaw, R. & Lopez-Vaamonde, C. (1999) Preservation of hymenoptera specimens for subsequent molecular and morphological study. Zoologica Scripta, 28, 261–267.

    Ratsnasingham, S. & Hebert, P.N.D. (2007) BOLD: The Barcode of Life Data System www. barcodinglife.org). Molecular Ecology Notes, 7, 355–364.

    Rivera Castillo, J.M. (2008) Utility of the cytochrome oxidase I (COI) for species identification and phylogeographic analysis in black flies Diptera: Simuliidae). MSc Thesis, Toronto, 97 pp.

    Rivera, J. & Currie, D. (2009) Identification of Nearctic black flies using DNA barcodes (Diptera: Simuliidae). Molecular Ecology Resources, 9, 224–236.

    Rodríguez-Pérez, M.A., Lilley, B.G., Domínguez-Vázquez, A., Segura-Arenas, R., Lizarazo-Ortega, C., Mendoza-Hererra, A., Reyes-Villanueva, F. & Unnasch, T.R. (2004) Polymerase Chain Reaction monitoring of transmission of Onchocerca volvulus in two endemic states in Mexico. American Journal of Tropical Medicine and Hygiene, 70, 38–45.

    Ruiz, F.J. (2010) Systematics of the Anopheles Nyssorhynchus) Oswaldoi group in Latin America. PhD Thesis, Canterbury Christ Church University, xxii + 214 pp and appendixes.

    Saccone, C., Decarla, G., Gissi, C., Pesole, G. & Reynes, A. (1999) Evolutionary genomics in the Metazoa: the mitochondrial DNA as model system. Gene, 238, 195–210.

    Scarpassa, V. M. & Hamada, N. (2003) Isozyme variation in four species of the Simulium perflavum species group (Diptera: Simuliidae) from the Brazilian Amazon. Genetics and Molecular Biology, 26, 39–46.

    Schander, C. & Halanychi, K. (2003) DNA, PCR and formalinized animal tissue – a short review and protocols. Organisms Diversity and Evolution, 3, 195–205.

    Schindler, D.E. & Miller, S.E. (2005) DNA barcoding a useful tool for taxonomists. Nature, 435, 17.

    Shelley, A.J., Arzube, M. & Couch, C.A. (1989) The Simuliidae (Diptera) of the Santiago onchocerciasis focus in Ecuador. Bulletin of the British Museum Natural History Entomology series, 58, 79–130.

    Shelley, A.J., Hernández, L.M., Maia-Herzog, M., Luna Dias, A.P.A. & Garritano, P.R. (2010) The Blackflies of Brazil (Diptera, Simuliidae). In: J. Adis, J. Arias, S. Golovatch, K. M. Mantzev, G. Rueda-Delgado & E. Domínguez Eds.), Aquatic Biodiversity in Latin America ABLA Series, Vol. 6., Pensoft, Sofia-Moscow, 821pp.

    Shelley, A.J., Hernández, L.M., Maia-Herzog, M., Luna Dias, A.P.A. (2002a) Morphological variation in the larva of Simulium guianense s.l. Wise (Dipt., Simuliidae), a primary vector of human onchocerciasis in Brazil. Entomologist’s Monthly Magazine, 138, 95–102.

    Shelley, A.J., Hernández, L.M. & Penn, M. (2002b) A biosystematic revision of the blackflies (Diptera: Simuliidae) of Belize, Central America. Bulletin of the Natural History Museum Entomology, 71, 135–271.

    Shelley, A.J., Maia-Herzog, M., Lowry, C.A. & Luna Dias, A.P.A., Garritano, P.R., Shelley, A.J., Camargo, M. & Carter, H.G. (2000) The Simuliidae (Diptera) of the secondary onchocerciasis focus at Minaçu in Central Brazil. Bulletin of the Natural History Museum Entomology, 69, 171–221.

    Shokralla, S., Zhou, X., Jansen, D.H., Hallwachs, W., Ladry, J.-F., Jacobus, L.M. & Hajibabei, M. (2011). Pyrosequencing for mini-barcoding of fresh and old museum specimens. PLoS ONE, 7, 1–4.

    Shufran, K.A., Burd, J.D., Anstead, J.A. & Lushai, G. (2000) Mitochondrial DNA sequence divergence among greenbug Homoptera: Aphididae) biotypes: evidence for host-adapted genes. Insect Molecular Biology, 9, 179–184.

    Simon, C., Buckley, T.T., Frati, F., Stewart, J.B. & Beckenbach, A.T. (2006) Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA. Annual Review of Ecology, Evolution and Systematics, 37, 545–579.

    Simon, C., Frati, F., Beckenbach, A.T., Crespi, B., Liu, H. & Flook, P. (1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved chain reaction primers. Annals of the Entomological Society of America, 87, 651–701.

    Simmons, R.B. & Weller, S.J. (2001) Utility and evolution of cytochrome b in insects. Molecular Phylogenetics and Evolution, 20, 196–210.

    Smith, A.L., Fisher, B.L. & Hebert, P.D.N. (2005) DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropods groups: the ants of Madagascar. Philosophical Transactions of the Royal Society, 360, 1825–1834.

    Smith, A. L., Poyarkov Jr., N.A. & Hebert, P.D.N. (2007a) CO1 DNA barcoding amphibians: take the chance, meet the challenge. Molecular Ecology Resources, 8, 1–12.

    Smith, A.L., Rodríguez, J.J., Whitfield, J.B., Deans, A.R., Janzen, D.H., Hallwachs, W. & Hebert, P.D.N. (2008) Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections. Proceedings of the National Academy of Science USA, 105, 12359–12364.

    Smith, A.L., Wood, D.M., Janzen, D.H., Hallwachs, W. & Hebert, P.D.N. (2007b) DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists. Proceedings of the National Academy of Science USA, 104, 4967–4972.

    Smith, A. L., Woodley, N.W., Janzen, D.H., Hallwachs, W. & Hebert, P.D.N. (2006) DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies Diptera: Tachinidae). Proceedings of the National Academy of Science, 103, 3657–3662.

    Stoeckle, M. Y. & P. D.N Hebert 2008. Barcode of Life: DNA tags help to classify animals. Scientific American, October 2, 66–71.

    Sweeney, B.W., Battle, J.M., Jackson, J.K. (2011) Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality? Journal of North American Benthology Society, 30, 195–216.

    Tamura, K., Peterson, D., Peterson, N., Stoecher, G., M. Nei, & Kumar, S. (2007) MEGA 5 [available at http://www.megasoftware.net].

    Taylor, H.R. & Harris, W.E. (2012). An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding. Molecular Ecology Resources [online version doi:10.1111/j.1755–0998.2012.03119.x]

    Toé, L., Back, C., Adjami, A.G., Tang, J.M. & Unnasch, T.R. (1997) Onchocerca volvulus: comparisons of field collection methods for the preservation of parasite and vector samples for PCR analysis. Bulletin of the World Health Organization, 75, 443–447.

    Vogler, A. & Monaghan, M.T. (2007) Recent advances in DNA taxonomy. Journal of Zoological Systematics and Evolutionary Research, 45, 1–10.

    Ward, R.D., Zemlak, T.S., Innes, B.H., Last, P.R. & Hebert, P.D.N. (2005) DNA barcoding Australia’s fish species. Philosophical Transactions of the Royal Society of London, Biological Series, 360, 1847–1857.

    Wheeler, Q.D. (2005) Losing the plot: DNA “barcodes” and taxonomy. Cladistics, 21, 401–407.

    Wheeler, Q.D., Raven, P.H. & Wilson, E.O. (2004) Taxonomy: Impediment or Expedient. Science, 303, 285.

    Will, K.P., Mishker, B.D. & Wheeler, Q.D. (2005) The perils of DNA Barcoding and the need for integrative taxonomy. Systematic Biology, 54, 844–851.

    Zemlak, T.S., Ward, R.D., Connel, A.D., Holmes, B.H. & Hebert, P.N.D. (2009) DNA barcoding revealed overlooked marine fishes. Molecular Ecology Resources, Special issue on Barcoding Life, supplement 1, 217–223.

    Zhang, D-X. & Hewitt, G.M. (1997) Assessment of the universality and utility of a set of conserved mitochondrial COI primers in insects. Insect Molecular and Biology, 6, 143–150.

    Zhou, X., Adamowicz, S.J., Jacobus, L.M., DeWalt, R.E., Hebert, P.N.D. (2009) Towards a comprehensive barcode library for arctic life. Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada. Frontiers in Zoology, 6, 1–5.