Skip to main content Skip to main navigation menu Skip to site footer
Type: Articles
Published: 2012-02-10
Page range: 1–30
Abstract views: 43
PDF downloaded: 3

Morphological and molecular diversification of slender salamanders (Caudata: Plethodontidae: Batrachoseps) in the southern Sierra Nevada of California with descriptions of two new species

Department of Ecology and Evolutionary Biology, 75 N. Eagleville Rd., U-3043, University of Connecticut, Storrs, CT 06269, USA
Department of Ecology and Evolutionary Biology, 75 N. Eagleville Rd., U-3043, University of Connecticut, Storrs, CT 06269, USA Instituto de Investigación en Recursos Cinegéticos (IREC) (CSIC-UCLM-JCCM), Ronda de Toledo, s/n 13005 Ciudad Real, Spain
16333 Deer Path Lane, Clovis, CA 93619-9735, USA
Museum of Vertebrate Zoology, 3101 Valley Life Sciences Building, University of California, Berkeley, CA 94720-3160, USA
Amphibia Batrachoseps altasierrae sp. nov. Batrachoseps bramei sp. nov. Batrachoseps relictus Kern River Canyon morphometrics allozymes cytochrome b

Abstract

Slender salamanders of the genus Batrachoseps achieve relatively high diversity in the Kern Canyon region at the southernend of the Sierra Nevada of California through high turnover of species with small geographic ranges. The status of severalpopulations of Batrachoseps in this region is enigmatic, and both morphological and molecular data have suggested thatsome populations do not belong to any of the currently recognized species. Identification of species in this region is com-plicated by the apparent extinction of Batrachoseps relictus in the vicinity of its type locality in the Lower Kern RiverCanyon. Here we analyze a comprehensive morphological dataset to evaluate diversity in the Kern River Canyon region.We conclude that populations from Breckenridge Mountain are conspecific with B. relictus, while populations from northof the Kern River previously treated as B. relictus belong to an undescribed species. The morphological data also showthe distinctiveness of populations from the Upper Kern River Canyon. Thus, we describe two new species, Batrachosepsbramei sp. nov. for populations from the Upper Kern River Canyon and Batrachoseps altasierrae sp. nov. for populationsfrom the southern Sierra Nevada previously referred to B. relictus. B. bramei sp. nov. and B. relictus are members of thenigriventris group; B. altasierrae sp. nov. belongs to the group formerly called the relictus group, which we rename thediabolicus group. We conclude by presenting allozyme and mitochondrial DNA sequence data that support the distinctiveness of these newly described species and provide a hypothesis of relationships within the nigriventris group.

References

  1. Bartlett, R.D. & Bartlett, P.P. (2009) Guide and Reference to the Amphibians of Western North America (North of Mexico) and Hawaii. University of Florida Press, Gainesville, 217 pp.

    Brame, A.H. Jr. & Murray, K.F. (1968) Three new slender salamanders (Batrachoseps) with a discussion of relationships and speciation within the genus. Bulletin of the Natural History Museum of Los Angeles County, 4, 1–35.

    Brown, J.M., Hedtke, S.M., Lemmon, A.R. & Lemmon, E.M. (2010) When trees grow too long: investigating the causes of highly inaccurate Bayesian branch length estimates. Systematic Biology, 59, 145–161.

    Camp, C.L. (1915) Batrachoseps major and Bufo cognatus, new Amphibia from southern California. University of California Publications in Zoology, 12, 327–334.

    Chatzimanolis, S. & Caterino, M.S. (2007) Toward a better understanding of the “Transverse Range break”: lineage diversification in southern California. Evolution, 61, 2127–2141.

    Cope, E.D. (1869) A review of the species of the Plethodontidae and Desmognathidae. Proceedings of the Academy of Natural Sciences of Philadelphia, 21, 93–118.

    de Queiroz, K. (2007) Species concepts and species delimitation. Systematic Biology, 56, 879–886.

    DeBry, R.W. & Olmstead, R.G. (2000) A simulation study of reduced tree-search effort in bootstrap resampling analysis. Systematic Biology, 49, 171–179.

    Desper, R. & Gascuel, O. (2002) Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle. Journal of Computational Biology, 9, 687–705.

    Dunn, E.R. (1926) The Salamanders of the Family Plethodontidae. Smith College, Northampton, Massachusetts, 456 pp.

    Fan, Y., Wu, R., Chen, M.-H., Kuo, L. & Lewis, P.O. (2011) Choosing among partition models in Bayesian phylogenetics. Molecular Biology and Evolution, 28, 523–532.

    Grinnell, J. & Camp, C.L. (1917) A distributional list of the amphibians and reptiles of California. University of California Publications in Zoology, 17, 127–208.

    Hansen, R.W. & Wake, D.B. (2005a) Batrachoseps simatus Brame and Murray, 1968. In: Lannoo, M. (Ed.), Amphibian Declines: the Conservation Status of United States Species. University of California Press, Berkeley, pp. 691–693.

    Hansen, R.W. & Wake, D.B. (2005b) Batrachoseps relictus Brame and Murray, 1968. In: Lannoo, M. (Ed.), Amphibian Declines: the Conservation Status of United States Species. University of California Press, Berkeley, pp. 688–690.

    Hendrickson, J.R. (1954) Ecology and systematics of salamanders of the genus Batrachoseps. University of California Publications in Zoology, 54, 1–46.

    Hilton, W.A. (1948) Salamander notes from the Northwest. Herpetologica, 4, 120.

    Huelsenbeck, J.P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics, 17, 754–755.

    Jennings, M.R. (1996) Status of amphibians. In: Sierra Nevada Ecosystem Project, Final Report to Congress, Volume II. Assessments and Scientific Basis for Management Options. University of California, Davis, Wildlife Resources Center Report 37, pp. 921–944.

    Jennings, M.R. (2004) An annotated check list of the amphibians and reptiles of California and adjacent waters. California Fish and Game, 90, 161–213.

    Jennings, M.R. & Hayes, M.P. (1994) Amphibian and Reptile Species of Special Concern in California. California Department of Fish and Game, Rancho Cordova, California, 255 pp.

    Jockusch, E.L. (1996) Evolutionary Studies in Batrachoseps and other Plethodontid Salamanders: Correlated Character Evolution, Molecular Phylogenetics, and Evolution of Reaction Norms. Ph.D. Dissertation, University of California, Berkeley, 220 pp.

    Jockusch, E.L. (1997) Geographic variation and phenotypic plasticity of number of trunk vertebrae in slender salamanders, Batrachoseps (Caudata: Plethodontidae). Evolution, 51, 1964–1980.

    Jockusch, E.L., Wake, D.B. & Yanev, K.P. (1998) New species of Batrachoseps (Caudata: Plethodontidae) from the Sierra Nevada, California. Los Angeles County Museum Contributions in Science, 472, 1–17.

    Jockusch, E.L., Yanev, K.P. & Wake, D.B. (2001) Molecular phylogenetic analysis of slender salamanders, genus Batrachoseps (Amphibia: Plethodontidae), from central coastal California with descriptions of four new species. Herpetological Monographs, 15, 54–99

    Jockusch, E.L. & Wake, D.B. (2002) Falling apart and merging: the diversification of slender salamanders (Plethodontidae: Batrachoseps) in the American West. Biological Journal of the Linnean Society, 76, 361–391.

    Kuchta, S.R. & Tan, A.M. (2005) Isolation by distance and post-glacial range expansion in the rough-skinned newt, Taricha granulosa. Molecular Ecology, 14, 225–244.

    Lapointe, F.J. & Rissler, L.J. (2005) Congruence, consensus, and the comparative phylogeography of codistributed species in California. American Naturalist, 166, 290–299.

    Lawson, R., Wake, D. B. & Beck, N.T. (1971) Tooth replacement in the red-backed salamander, Plethodon cinereus. Journal of Morphology, 134, 259–269.

    Lewis, P.O., Holder, M.T. & Swofford, D.L. (2010) Phycas v. 1.1.2. Software available from http://phycas.org.

    Macey, J.R., Strasburg, J.L., Brisson, J.A., Vredenburg, V.T., Jennings, M. & Larson, A. (2001) Molecular phylogenetics of western North American frogs of the Rana boylii species group. Molecular Phylogenetics and Evolution, 19, 131–143.

    Maiorana, V.C. (1978) Difference in diet as an epiphenomenon: space regulates salamanders. Canadian Journal of Zoology, 56, 1017–1025.

    Marlow, R.W., Brode, J.M. & Wake, D.B. (1979) A new salamander, genus Batrachoseps, from the Inyo Mountains of California, with a discussion of relationships in the genus. Natural History Museum of Los Angeles County Contributions in Science, 308, 1–17.

    Martínez-Solano, I., Jockusch, E.L. & Wake, D.B. (2007) Extreme population subdivision throughout a continuous range: phylogeography of Batrachoseps attenuatus (Caudata, Plethodontidae) in western North America. Molecular Ecology, 16, 4335–4355.

    Martínez-Solano, I. & Lawson, R. (2009) Escape to Alcatraz: evolutionary history of slender salamanders (Batrachoseps) on the islands of San Francisco Bay. BMC Evolutionary Biology, 8, 38.

    Martínez-Solano, I., Peralta-García, A., Jockusch, E.L., Wake, D.B., Vázquez-Domínguez, E. & Parra-Olea, G. (2012). Molecular systematics of Batrachoseps (Caudata, Plethodontidae) in southern California and Baja California: mitochondrial-nuclear DNA discordance and the evolutionary history of B. major. Molecular Phylogenetics and Evolution. doi: 10.1016/j.ympev.2011.12.026

    Moritz, C., Schneider, C.J. & Wake, D.B. (1992) Evolutionary relationships within the Ensatina eschscholtzii complex confirm the ring species interpretation. Systematic Zoology, 41, 273–291.

    Nei, M. (1972) Genetic distances between populations. American Naturalist, 106, 283–292.

    Nei, M. (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 538–590.

    Paradis, E., Claude, J. & Strimmer, K. (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289–290.

    Peabody, F.E. & Savage, J.M. (1959) Trackways of living and fossil salamanders. University of California Publications in Zoology, 63, 1–72.

    Pereira, R.J. & Wake, D.B. (2009) Genetic leakage after adaptive and nonadaptive divergence in the Ensatina eschscholtzii ring species. Evolution, 63, 2288–2301.

    Posada, D. & Crandall, K.A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817–818.

    Pyron, R.A. & Wiens, J.J. (2011) A large-scale phylogeny of Amphibia including over 2,800 species, and a revised classification of extant frogs, salamanders, and caecilians. Molecular Phylogenetics and Evolution, 61, 543–583.

    R Development Core Team (2008) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Software available from http://www.R-project.org.

    Recuero, E., Martínez-Solano, I., Parra-Olea, G. & García-París, M. (2006) Phylogeography of Pseudacris regilla (Anura: Hylidae) in western North America, with a proposal for a new taxonomic rearrangement. Molecular Phylogenetics and Evolution, 39, 293–304.

    Rissler, L.J., Hijmans, R.J., Graham, C.H., Moritz, C. & Wake, D.B. (2006) Phylogeographic lineages and species comparisons in conservation analyses: a case study of California herpetofauna. American Naturalist, 167, 655–666.

    Stebbins, R.C. (1985) A Field Guide to Western Reptiles and Amphibians. Second edition, revised. Houghton Mifflin Co., Boston, 336 pp.

    Stebbins, R.C. (2003) A Field Guide to Western Reptiles and Amphibians. Third edition, revised. Houghton Mifflin Co., Boston, 533 pp.

    Stebbins, R.C. & McGinnis, S.M. (in press) Field Guide to Amphibians and Reptiles of California, revised edition. University of California Press, Berkeley, 544 pp.

    Swofford, D.L. (2003) PAUP*4.0b: Phylogenetic Analysis Using Parsimony. Sinauer Associates, Sunderland, Massachusetts.

    Vieites, D.R., Román, S.N., Wake, M.H. & Wake, D.B. (2011) A multigene perspective on phylogenetic relationships in the largest family of salamanders, the Plethodontidae. Molecular Phylogenetics and Evolution, 59, 623–635.

    Vredenburg, V.T., Bingham, R., Knapp, R., Morgan, J.A.T., Moritz, C. & Wake, D. (2006) Concordant molecular and phenotypic data delineate new taxonomy and conservation priorities for the endangered mountain yellow-legged frog. Journal of Zoology, 271, 361–374.

    Wake, D.B. (1989) Phylogenetic implications of ontogenetic data. In: David, B., Dommergues, J.-L., Chaline, J. & Laurin, B. (Eds.), Ontogenèse et Évolution. Geobios, Mémoire Spécial 12, pp. 369–378.

    Wake, D.B. & Jockusch, E.L. (2000) Detecting species borders using diverse data sets: plethodontid salamanders in California. In: Bruce, R.C., Jaeger, R.G. & Houck, L.D. (Eds.), The Biology of the Plethodontidae. Kluwer Academic/Plenum Publishers, New York, pp. 95–119.

    Wake, D.B., Yanev, K.P. & Hansen, R.W. (2002) New species of slender salamander, genus Batrachoseps, from the southern Sierra Nevada of California. Copeia, 2002, 1016–1028.

    Yanev, K.P. (1978) Evolutionary Studies of the Plethodontid Salamander Genus Batrachoseps. Ph.D. Dissertation, University of California, Berkeley, 242 pp.

    Yanev, K.P. (1980) Biogeography and distribution of three parapatric salamander species in coastal and borderland California. In: Power, D.M. (Ed.), The California Islands: Proceedings of a Multidisciplinary Symposium. Santa Barbara Museum of Natural History, Santa Barbara, California, pp. 531–550.

    Zwickl, D.J. (2006) Genetic Algorithm Approaches for the Phylogenetic Analysis of Large Biological Sequence Datasets under the Maximum Likelihood Criterion. Ph.D. Dissertation, University of Texas, Austin, 115 pp.