Skip to main content Skip to main navigation menu Skip to site footer
Type: Articles
Published: 2010-09-17
Page range: 47–65
Abstract views: 85
PDF downloaded: 54

Molecular phylogeny of long-tailed shrews (genus Sorex) from México and Guatemala

Departamento de Zoología; Instituto de Biología, Universidad Nacional Autónoma de México; Apartado Postal 70-153, México, Distrito Federal, México 04510
Departamento de Zoología; Instituto de Biología, Universidad Nacional Autónoma de México; Apartado Postal 70-153, México, Distrito Federal, México 04510
Biology Department and Museum of Southwestern Biology, CERIA Building MSC03 2020, 1 University of New Mexico; Albuquerque, New Mexico, USA 87131-0001
Biology Department and Museum of Southwestern Biology, CERIA Building MSC03 2020, 1 University of New Mexico; Albuquerque, New Mexico, USA 87131-0001
Mammalia biogeography mammals mitochondrial DNA Soricidae systematics

Abstract

We present a molecular phylogeny of North American species of long-tailed shrews of the genus Sorex. Our focus is on Mexican and Guatemalan species to begin understanding their evolutionary relationships and to test the validity of nominal species. Seventy-seven sequences of the mitochondrial cytochrome b gene were analyzed, including 19 specimens representing nine Mexican and one Guatemalan species. Phylogenetic analyses using parsimony, maximum likelihood and Bayesian approaches revealed two major clades of North American species, all within the subgenus Otisorex. The first major clade includes S. trowbridgii and southern species (S. macrodon from Oaxaca; S. veraecrucis from Nuevo León, Michoacán, Chiapas, S. saussurei from Jalisco and Guatemala; S. veraepacis from Guerrero and Guatemala). Relatively deep branches among taxa characterize this clade and suggest that their early divergence from other North American shrews was soon after arrival of the ancestral stock from the Beringian region. The other major clade includes all other North American species of Sorex we examined, with two Mexican species, S. milleri and S. emarginatus, grouped in a subclade with the S. cinereus complex. Sorex veraecrucis is not, however, a monophyletic taxon because specimens of this nominal species were included in both the major clades. The Isthmus of Tehuantepec has likely played a role as a biogeographic barrier in the evolutionary history of Mexican shrews. This study of mitochondrial variation in southern North American shrews of the genus Sorex indicates there is substantial, previously undetected diversity that necessitates a revision of the taxonomy of S. veraecrucis and S. veraepacis.

References

  1. Avise, J.C. (2000) Phylogeography. The history and formation of species. Harvard University Press, London, England, 447 pp.

    Campbell, J.A. (1999) Distribution patterns of amphibians in Middle America. In: Duellman, W.E. (Ed.), Patterns of distribution of amphibians. A Global Perspective. The Johns Hopkins University Press, Baltimore and London, pp. 111–210.

    Carraway, L.N. (1990) A morphologic and morphometric analysis of the “Sorex vagrans species complex” in the pacific coast region. Special publications. The Museum Texas Tech University, 32, 1–76.

    Carraway, L.N. (2007) Shrews (Eulypotyphla: Soricidae) of Mexico. Monographs of the Western North American Naturalist, 3, 1–91.

    Centeno-García, E. (2004) Configuración geológica del Estado. In: García-Mendoza, A. M. de J. Ordoñez & M. Briones-Salas (Eds.), Biodiversidad de Oaxaca, Instituto de Biología Universidad Nacional Autónoma de México, Fondo Oaxaqueño para la Conservación de la Naturaleza, World Wildlife Fund, pp. 29–42.

    Churchfield, S. (1990) The natural history of shrews. Comstock Publishing Associates, A Division of Cornell University Press, Cornell, USA, 178 pp.

    Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (2003) México: Imagen desde el espacio. Conabio, México. Mosaico 2002 de imágenes Modis sin nubes del satélite Terra, bandas 1,4,3 (RGB), resolución espacial 250 metros, sobre un modelo digital de terreno.

    Conroy, C.J., Hortelano, Y., Cervantes, F. & Cook, J.A. (2001) The phylogenetic position of southern relictual species of Microtus. Mammalian Biology (Zeitschrift für Säugetierkunde) 66, 332–344.

    Darbre, P.D. (1999) Basic molecular biology: essential techniques. Wiley, New York, 193 pp.

    Demboski, J.R. & Cook, J.A. (2001) Phylogeography of the dusky shrew, Sorex monticolus (Insectivora, Soricidae): insight into deep and shallow history in northwestern North America. Molecular Ecology, 10, 1227–1240.

    Demboski, J.R. & Cook, J.A. (2003) Phylogenetic Diversification within the Sorex cinereus group (Soricidae). Journal of Mammalogy, 84, 144–158.

    Diersing, V.E. (1980) Systematics and Evolution of the pygmy shrews (Subgenus Microsorex) of North America. Journal of Mammalogy, 61, 76–101.

    Dokuchaev, N.E. (1997) A new species of shrew (Soricidae, Insectivora) from Alaska. Journal of Mammalogy, 78, 811–817.

    Dubey, S., Salamin, N., Ohdachi, S.D., Barrierre, P. & Vogel, P. (2007) Molecular phylogenetics of shrews (Mammalia:Soricidae) reveal timing of transcontinental colonizations. Molecular Phylogenetics and Evolution, 44, 126–137.

    Endo, H., Fukuta, K., Kimura, J., Sasaki, M., Hayashi, Y. & Oshida, T. (2004) Phylogenetic relationships among populations of the mouse deer in the Southeast Asian Region from the nucleotide sequence of cytochrome b gene. Mammal Study, 29, 119–123.

    Ferrusquía-Villafranca, I. (1993) 1. Geology of Mexico: a synopsis. In: (Ramamoorthy, T. P., Bye, R., Lot, A. & Fa, J. (Eds.) Biological diversity of Mexico: Origins and distribution. Oxford University Press, New York, pp. 3–107.

    Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783–791.

    Findley, J.S. (1955) Taxonomy and distribution of some American shrews. University of Kansas Publications Museum of Natural History, 7, 613–618.

    Fumagalli, L., Taberlet, P., Stewart, D.T., Gielly, L., Hausser, J. & Vogel, P. (1999) Molecular phylogeny and evolution of Sorex shrews (Soricidae: Insectivora) inferred from mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution, 11, 222–235.

    George, S.B. (1988) Systematics, historical biogeography, and evolution of the genus Sorex. Journal of Mammalogy, 69, 443–461.

    George, S.B. & Sarich, V.M. (1994) Albumin evolution in the Soricinae and its implications for the phylogenetic history of the Soricidae. In: Merritt, J.F., Kirkland, Jr., G. L. & Rose, R. K. (Eds.), Advances in the Biology of Shrews. Carnegie Mus. Nat. Hist. Spec. Publ. 18, 289–293.

    González-Medrano, F. (1998) La vegetación de México y su historia. Ciencias, 52, 8–65.

    Guindon, S. & Gascuel, O. (2003) A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696–704.

    Halffter, G. (1987) Biogeography of the montane entomofauna of Mexico and Central America. Annual Review of Entomology, 32, 95–114.

    Hall, E.R. (1981) The mammals of North America. John Wiley & Sons. New York, 1:1–600 + 90 pp.

    Hall , T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.

    Harris, A.H. (1998) Fossil history of shrews in North America. In: Wójcik, J.M. & Wolsan, M. (Eds.), Evolution of Shrews. Mammal Research Institute Polish Academy of Sciences, pp. 133–156.

    Hewitt, G.M. (2004) Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London. Series B. Biological Sciences, 359, 183–195.

    Hennings, D. & Hoffmann, R.S. (1977) A review of the taxonomy of the Sorex vagrans species complex from western North America. Univ. Kans. Publ., Mus. Nat. Hist. 68, 1–35.

    Hillis, D.M., Moritz, C. & Mable, B.K. (1996) Molecular Systematics. Sinauer Associates, 655 pp.

    Huelsenbeck, J.P. & Imennov, N.S. (2002) Geographic origin of human mitochondrial DNA: accommodating phylogenetic uncertainty and model comparison. Systematic Biology, 51, 155–165.

    Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17, 754–755.

    Hutterer, R. (2005) Order Insectivora. In: Wilson, D. E. & Reeder, D. M. (Eds), Mammal Species of the World. Smithsonian Institution Press, Washington and London, pp. 282–300.

    Ivanitskaya, E.Y. (1994) Comparative cytogenetics and systematic of Sorex, a cladisitc approach. In: Merritt, J. F., Kirkland, G., & R. K. Rose, (Eds.), Advances in the Biology of Shrews. Carnegie Museum of Natural History Special Publication, Pittsburgh, pp. 313–323,

    Junge, J.A. & Hoffmann, R.S. (1981) An annotated key to the long-tailed shrews (genus Sorex) of the United States and Canada, with notes on Middle American Sorex. Occasional Papers of Museum of Natural History of the University of Kansas, 94, 1–48.

    Kurtén, B. & Anderson, E. (1980) Pleistocene mammals of North America. Columbia University Press, New York.

    Lessa, E.P. & Cook, J.A. (1998) The molecular phylogenetics of Tuco-Tucos (genus Ctenomys, Rodentia: Octodontidae) suggests an early burst of speciation. Molecular Phylogenetics and Evolution, 9, 88–99.

    Lewis, P.O. (2001) A likelihood approach to estimating phylogeny from discrete morphological character data. Systematic Biology, 50, 913–925.

    Long, C.A. (1974) Microsorex hoyi and Microsorex thompsoni. Mammalian Species, 33, 1–4.

    Luna Vega, I. & Alcántara Ayala, O. (2001) Análisis de simplicidad de endemismos (PAE) para establecer un modelo de vicarianza preliminar del bosque mesófilo de montaña mexicano. In: Llorente Bousquets, J. & Morrone, J. J. (Eds.), Introducción a la Biogeografía en Latinoamérica: Teorías, Conceptos, Métodos y Aplicaciones. Facultad de Ciencias, Universidad Nacional Autónoma de México, pp. 273–277.

    Maddison, W.P. & Maddison, D.R. (2007) Mesquite: a modular system for evolutionary analysis. Versión 2.0 http://mesquiteproject.org

    Maldonado-Koerdell, M. (1964) Geohistory and paleogeography of Middle America. In: West, R. C. (Ed.), Handbook of Middle American Indians Vol. 1. University of Texas Press Austin, pp. 3–32.

    Matson, J.O. (2008) Intrapopulation variation in Ibarras’s Verapaz shrew (Sorex veraepacis ibarrai) from Guatemala. Mammalian Biology, 73, 66–69.

    Nagorsen, D. & Panter, N. (2009) Identification and status of the Olympic shrew (Sorex rohweri) in British Columbia. Northwestern Naturalist, 90, 117–129.

    Ohdachi, S.N., Dokuchaev, E., Hasegawa, M. & Masuda, R. (2001) Intraspecific phylogeny and geographical variation of six species of northeastern Asiatic Sorex shrews based on the mitochondrial cytochrome b sequences. Molecular Ecology, 10, 2199–2213.

    Ohdachi, S.D., Hasegawa, M., Iwasa, M.A., Vogel, P., Oshida, T., Lin An, L.K. & Abe, H. (2006) Molecular phylogenetics of soricid shrews (Mammalia) based on mitochondrial cytochrome b gene sequences: with special reference to the Soricinae. Journal of Zoology, 270, 177–191.

    O’Neill, M.B., Nagorsen, D.W. & Baker, R.J. (2005) Mitochondrial DNA variation in water shrews (Sorex palustris, Sorex bendirii) from western North America: implications for taxonomy and phylogeography. Canadian Journal of Zoology, 83, 1469–1475.

    Posada, D. & Crandall, K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 1, 817–818.

    Rausch, R.L., Feagin, J. & Rausch, V.R. (2007) Sorex rohweri sp. nov. (Mammalia, Soricidae) from northwestern North America. Mammalian Biology, 72, 93–105.

    Repenning, C.A. (1967) Subfamilies and genera of the Soricidae. United States Geological Survey Professional Paper, 565, 1–74.

    Reumer, J.W.F. (1994) Phylogeny and distribution of the Crocidosoricinae (Mammalia: Soricidae). In: Merritt, J.F., Kirkland Jr., G. L. & Rose, R. K. (Eds.), Advances in the Biology of Shrews. Carnegie Mus. Nat. Hist. Spec. Publ. 18, 345–356.

    Sanderson, M.J. (2003) r8s; inferring absolute rates of evolution and divergence times in the absence of a molecular clock. Bioinformatics, 19, 301–302.

    Shafer, A.B.A. & Stewart, D.T. (2007) Phylogenetic relationships among Nearctic shrews of the genus Sorex (Insectivora, Soricidae) inferred from combined cytochrome b and inter-SINE fingerprint data using Bayesian analysis. Molecular Phylogenetics and Evolution, 44, 192–203.

    Smith, M.F. & Patton, J.L. (1993) The diversification of South American murid rodents: evidence from mitochondrial DNA sequence data for the akodontine tribe. Biological Journal of the Linnean Society, 50, 149–177.

    Stewart, D.T., McPherson, Robichaud, M. & Fumagalli, J. (2003) Are there two species of pigmy shrews (Sorex)? Revisiting the question using DNA sequence data. Can Field-Nat, 117, 82–88.

    Storch, G., Qiu, Z.H. & Zazhigin, V.S. (1998) Fossil history of shrews in Asia. In: Wójcik, J.M. & Wolsan, M. (Eds.), Evolution of Shrews. Mammal Research Institute Polish Academy of Sciences, pp. 92–117.

    Sullivan, J, Markert, J.A. & Kilpatrick, C.W. (1997) Phylogeography and molecular systematic of the Peromyscus aztecus species group (Rodentia: Muridae) inferred using parsimony and likelihood. Systematic Biology, 46, 426–440.

    Surzycki, S. (2000) Basic techniques in molecular biology. Springer, Berlin, 434 pp.

    Swofford, D.L. (1999) Phylogenetic Analysis Using Parsimony (and other Methods) PAUP* 4.0. Sinauer Associates, Inc, Sunderland, MA..

    Toledo, V.M. (1982) Pleistocene changes in vegetation in tropical Mexico. In: Prance, G. T. (Ed.), Biological diversification in the tropics. Columbia University Press, New York, pp. 93–111.

    Villa, B. & Cervantes, F. (2003) Los mamíferos de México. Instituto de Biología, Universidad Nacional Autónoma de México. México, D.F., 140 pp.

    Van Zyll de Jong, C.G. & Kirkland JR., G.L. (1989) A morphometric analysis of the Sorex cinereus group in central and eastern North America. Journal of Mammalogy, 70, 110–122.

    Wilson, D.E. & Ruff, S. (1999) The Smithsonian Book of North American Mammals. American Society of Mammalogists. Washington, D. C., 750 pp.