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Type: Article
Published: 2008-12-05
Page range: 39–50
Abstract views: 44
PDF downloaded: 2

ZooBank: Developing a nomenclatural tool for unifying 250 years of biological information

Department of Natural Sciences, The Bishop Museum, 1525 Bernice St., Honolulu, Hawaii 96817, USA
International Commisssion on Zoological Nomenclature, c/o The Natural History Museum, Cromwell Road, SW7 5BD London, U.K
General Linnaeus Prospective registration Registration of names and acts Retrospective registration Systema Naturae

Abstract

Nomenclature represents the backbone upon which virtually all biological information is organized. However, the practice of zoological nomenclature has changed relatively little since its start in 1758. As modern technology changes the paradigm under which modern scientists exchange information, there is increasing need to capitalize on these same technologies to fortify nomenclature. ZooBank has been proposed as the official registry of names and nomenclatural acts, in zoology, as well as associated published works and their authors, and type specimens. Having a coordinated registry of zoological names, integrated with the existing Code of Zoological Nomenclature, will allow increased efficiency of communication among biologists, and enhanced stability of names. Such a registry would encompass two distinct realms, each with their own set of challenges. Retrospective registration involves the monumental task of aggregating and validating two and a half centuries of existing names, whereas prospective registration must be tightly integrated with the future paradigm in which scientific names are created and managed under new models of publication. The prototype of ZooBank has been hosted at Bishop Museum during its initial development phase. Following the lead of standard-setting bodies in biodiversity informatics, Life Science Identifiers (LSIDs) have been selected for use as the globally unique identifiers for ZooBank registration entries. The first ZooBank LSIDs were issued on January 1 st , 2008, and included five new fish species described in a work published that same day, as well as all 4,819 names established in the 10 th Edition of Linnaeus’ Systema Naturae. Three alternate scenarios for implementing mandatory registration in ZooBank have been articulated, each incorporating different degrees of coordination between published works and registration events. A robust discussion involving a broad spectrum of practicing zoological taxonomists is required over the next several years to define the specific implementation aspects of ZooBank.

References

  1. Bouchet, P. (2006) The magnitude of marine biodiversity. In: Duarte, C. (Ed.) (2006). The exploration of marine biodiversity: Scientific and technological challenges. Fundacin BBVA, Bilbao, pp. 31–62.

    EDIT (European Distributed Institute of Taxonomy) (2008). Future Trends of Taxonomy - Annual General Meeting, Carvoeiro, Portugal, January, 2008. EDIT, Paris.

    Linnaeus, C. (1758) Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Tomus I. Editio decima, reformata. Laurentus Salvius, Holmiae.

    Melville, R.V. (1995) Towards stability in the names of animals: A history of the International Commission on Zoological Nomenclature 18951995. International Trust for Zoological Nomenclature, London.

    Neave, S.A. (1939–1996) Nomenclator Zoologicus. Vols I–X. Zoological Society of London, London (available at http://uio.mbl.edu/NomenclatorZoologicus/browse.html)

    Polaszek, A., Agosti, D., Alonso-Zarazaga, M., Beccaloni, G., de Place Bjrn, P., Bouchet, P., Brothers, D.J., Earl of Cranbrook, Evenhuis, N., Godfray, H.C.J., Johnson, N.F., Krell, F.-T., Lipscomb, D., Lyal, C.H.C., Mace, G.M., Mawatari, S., Miller, S.E., Minelli, A., Morris, S., Ng, P.K.L., Patterson, D.J., Pyle, R.L., Robinson, N., Rogo, L., Taverne, J., Thompson, F.C., van Tol, J., Wheeler, Q.D. & Wilson, E.O. (2005a) Commentary: A universal register for animal names. Nature, 437, 477. (http://www.iczn.org/Nature_Commentary.pdf)

    Polaszek, A., Alonso-Zarazaga, M., Bouchet, P., Brothers, D.J., Evenhuis, N., Krell, F.-T., Lyal, C.H.C., Minelli, A., Pyle, R.L., Robinson, N.J., Thompson, F.C. & van Tol, J. (2005b) ZooBank: the open-access register for zoological taxonomy: Technical Discussion Paper. Bulletin of Zoological Nomenclature, 62, 210–220. (http://www.iczn.org/ZooBank_Paper.htm)

    Polaszek, A., Pyle, R. & Yanega, D. (2008) Animal names for all: ICZN, ZooBank, and the New Taxonomy. In: Wheeler, Q.D. (Ed.). The New Taxonomy. CRC Press, Boca Raton, pp. 129–142.

    Pyle, R.L. (2004) Taxonomer: A relational data model for managing information relevant to taxonomic research. Phyloinformatics. 1, 1–54. (http://systbio.org/files/phyloinformatics/1.pdf)

    Pyle, R.L., Earle, J.L. & Greene, B.D. (2008) Five new species of the damselfish genus Chromis (Perciformes: Labroidei: Pomacentridae) from deep coral reefs in the tropical western Pacific. Zootaxa. 1671, 3–31. (http://www.mapress.com/zootaxa/2008/f/zt01671p031.pdf)

    Sherborn, C.D. (1902–1933) Index Animalium; sive, Index nominum quae ab A.D. MDCCLVIII generibus et speciebus animalium imposita sunt. Trustees of the British Museum. London (available at http://www.sil.si.edu/digitalcollections/indexanimalium/)