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Type: Article
Published: 2008-06-12
Page range: 22–38
Abstract views: 117
PDF downloaded: 6

Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species

Department of life science, National Taiwan Normal University, 88 Ting-Chow Rd, Sec 4, Taipei, 116, Taiwan Research Center for Biodiversity, Academia Sinica, 128 Academia Road, Section 2, Nankang, Taipei 115, Taiwan
Department of life science, National Taiwan Normal University, 88 Ting-Chow Rd, Sec 4, Taipei, 116, Taiwan
Research Center for Biodiversity, Academia Sinica, 128 Academia Road, Section 2, Nankang, Taipei 115, Taiwan
Mollusca COI 16S rRNA Pilosphaera yentoensis boonkioensis

Abstract

Cyclophoridae is the dominant family of operculated terrestrial snails in East Asia. The group consists of four subfamilies and approximately 300 species that are currently classified into 34 genera. The species occupy various habitatsand show a high morphological diversity. The molecular phylogenetic relationships of this group have not previously been discussed. In order to uncover the relationships within the family, we sequenced parts of the mitochondrial cytochrome oxidase subunit I (COI) and of the 16S rRNA gene from 32 species of 10 genera of cyclophorid and established the phylogenetic tree using neighbor joining, Bayesian and maximum likelihood analyses to construct phylogenetic trees. The results based on mtDNA sequences suggest that the genera Cyclophorus, Cyclotus, Leptopoma, and Cyathopoma are monophyletic while the traditional genus Japonia appeared polyphyletic and then J. zebra should be moved to the new genus Pilosphaera. In addition, Pilosphaera yentoensis n. sp. and Japonia boonkioensis n. sp. are described in this paper.

References

  1. Azuma, M. (1982) Colored illustrations of the land snail of Japan (Enlarged revised edition). Hoikusha Publishing Co. Ltd. Oaska, XVI, 343 pp.

    Barrett, R.D.H. & Hebert, P.D.N. (2005) Identifying spiders through DNA barcoding. Canadian Journal of Zoology, 83, 481–489.

    Chiba, S. (1999) Accelerated evolution of land snails Mandarina in the oceanic Bonin Islands: evidence from mitochondrial DNA sequences. Evolution, 53, 460–471.

    Farris, J.S., Kallersj, M., Kluge, A.G. & Bult, C. (1995) Constructing a significance test for incongruence. Systematic Biology, 44, 570–572.

    Gould, A.A. (1859) Descriptions of shells collected in the North Pacific Exploring Expedition under Captains Ringgold and Rodgers. Proceedings of Boston Society of Natural History, 6, 422–426; 7, 40–45, 138–142.

    Gray, J.E. (1839) Molluscous animals and their shells. In: Beechey, E.W. (Ed.), The Zoology of Captain Beechey’s Voyage—in His Majesty’s Ship Blossom. pp. 103–155.

    Gray, J.E. (1847) A list of the genera of recent Mollusca, their synonyma and types. Proceeding of the Zoological Society of London, 15, 129–219

    Guindon, S. & Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696–704.

    Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Research Symposium Series, 41, 95–98.

    Healy, J.M. (1996) Molluscan sperm ultrastructure: correlation with taxonomic units within the Gastropoda, Cephalopoda and Bivalvia. In: Taylor, J.D. (Ed.), Origin and Evolutionary Radiation of the Mollusca. Oxford University Press, New York, pp. 99–113.

    Hebert, P.D.N., Penton, E.H., Burns, J.M., Janzen, D.H., & Hallwachs, W. (2004a) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Science, 101, 14812–14817.

    Hebert, P.D.N., Stoeckle, M.Y., Zemiak, T.S., Francis, C.M. (2004b) Identification of birds through DNA barcodes. PLoS Biology, 2, 1657–1663.

    Higo, S.I. & Goto, Y.H. (1993) A systematic list of molluscan shells from Japanese Is. and adjacent area. Elle Scientific Publications, Osaka, Japan, 693 pp.

    Hogg, I.D., & Hebert, P.D.N. (2004) Biological identification of springtails (Collembola: Hexapoda) from the Canadian Arctic, using mitochondrial DNA barcodes. Canadian Journal of Zoology, 82, 749–754.

    Jiang, L., Wu, W.L. & Lin, Y.S. (1997) Efficient methods for isolating mitochondrial DNA from fresh or fixed molluscan specimens. Zoological Studies, 36, 74–78.

    Kantor, Y.I., (1996) Phylogeny and relationships of Neogastropoda. In: Taylor, J.D. (Ed.), Origin and evolutionary radiation of the Mollusca. Oxford University Press, New York, pp. 221–230.

    Kay, E.A., Wells, F.E. & Ponder, W.F. (1998) Class Gastropoda. In: Beesley, P.L., Ross, G.J.B. & Wells, A. (Eds), Mollusca: The Southern Synthesis. Fauna of Australia, vol. 5, part B. CSIRO Publishing, Melbourne, pp. 565–604.

    Kishino, H. & Hasegawa, M. (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution, 29, 170–179.

    Kuroda, T. (1941) A catalogue of Molluscan shells from Taiwan (Formosa), with descriptions of new species. Memoirs of the faculty of science and agriculture Taihoku Imperial University, 22, 66–216.

    Lee, Y.C. & Wu, W.L. (2001) The cyclophorids fauna of Taiwan. Bulletin of Malacoloy Republic of China, 25, 45–78.

    Lee, Y.C., Lue, K.Y. & Wu, W.L. (2008) A molecular phylogenetics investigation of Cyathopoma (Prosobranchia: Cyclophoridae) in East Asia. Zoological Studies, in press.

    Linn, C. (1758) Systema naturae per regna tria naturae. 10th ed. Stockholm, 824 pp.

    Lydeard, C., Holznagel, W.E., Ueshima, R. & Kurabayashi, A. (2002) Systematic implications of extreme loss or reduction of mitochondrial LSU rRNA helical-loop structures in gastropods. Malacologia, 44, 349–352.

    Lydeard, C., Holznagel, W.E., Glaubrecht, M. & Ponder, W.F. (2002) Molecular phylogeny of a circum-global, diverse gastropod superfamily (Cerithioidea: Mollusca: Caenogastropoda): pushing the deepest phylogenetic limits of mitochondrial LSU rDNA sequences. Molecular Phylogenetics and Evolution, 22, 399–406.

    McArthur, A.G. & Koop, B.F. (1999) Partial 28S rDNA sequences and the antiquity of hydrothermal vent endemic gastropods. Molecular Phylogenetics and Evolution, 13, 255–274.

    Millard, V. (1996) Classification of Mollusca—A classification of world wide Mollusca. Victor Millard, South Africa. 544 pp.

    Minato, H. (1985) Two new Japonia (Prosobranchia: Cyclophoridae) from Japan. Venus, 44, 81–86.

    Paquin, P. & Hedin, M. (2004) The power and perils of molecular taxonomy: a case study of eyeless and endangered Circurina (Araneae: Dictynidae) from Texas caves. Molecular Ecology, 13, 3239–3255.

    Pilsbry, H.A. (1900) Notices of some new Japanese mollusks. The Nautilus, 14, 11–12.

    Pilsbry, H.A. & Hirase, Y. (1904) Descriptions of new land snails of the Japanese Empire. Academy of Natural Sciences of Philadelphia, 56, 616–632.

    Pilsbry, H.A. & Hirase, Y. (1905) Catalogue of the land and freshwater Mollusca of Taiwan (Formosa), with description of new species. Academy of Natural Sciences of Philadelphia, 57, 720–752.

    Pinceel, J., Jordaens, K., Van Houtte, N., De Winter, A.J. & Backeljau, T. (2004) Molecular and morphological data reveal cryptic taxonomic diversity in the terrestrial slug complex Arion subfuscus/fuscus (Mollusca, Pulmonata, Arionidae) in continental north-west Europe. Biological Journal of the Linnean Society, 83, 23–38.

    Ponder, W.F. & Lindberg, D.R. (1997) Towards a phylogeny of gastropod molluscs: an analysis using morphological characters. Zoological Journal of the Linnean Society, 119, 88–265.

    Posada D. & Crandall K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817–818.

    Remigio, E.A. & Hebert, P.D.N. (2003) Testing the utility of partial COI sequences for phylogenetic estimates of gastropod relationships. Molecular Phylogenetics and Evolution, 29, 641–647.

    Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Baysian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574.

    Rosenberg, G., Tillier, S., Tillier, A., Kuncio, G.S., Hanlon, R.T., Masselot, M. & Williams, C.J. (1997) Ribosomal RNA phylogeny of selected major clades in the mollusca. Journal of Molluscan Studies, 63, 301–309.

    Smith, M.A., Woodley, N.E., Janzen, D.H., Hallwachs, W. & Hebert, P.D.N. (2006) DNA barcodes reveal cryptic hostspecificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proceedings of the National Academy of Science, 103, 3657–3662.

    Swofford, D.L. (1998) PAUP* 4.0: Phylogenetic Analysis Using Parsimony (*and Other Methods). Sunderland, Massachusetts (software).

    Tajima, F. (1989) Statistical methods to test for nucleotide mutation hypothesis by DNA polymorphism. Genetics, 123, 585–595.

    Thollesson, M. (1999) Phylogenetic analysis of Euthyneura (Gastropoda) by means of the 16S rRNA gene: use of a ‘fast’ gene for ‘higher-level’ phylogenies. Proceedings of the Royal Society of London Series B, 266, 75–83.

    Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876–4882.

    Tillier, S., Masselot, M., Philippe, H. & Tillier, A. (1992) Phylogenie moleculaire des Gastropoda (Mollusca) fondee sur le sequencage partiel de l’ARN ribosome 28S. Comptes Rendus de l’Academie Des Sciences Paris, 314, 79–85.

    Vaught, K.C. (1989) A classification of the living Mollusca. American Malacolgists, Inc. Melbourne, Florida. 189 pp.

    Williams, S.T., Reid, D.G. & Littlewood, D.T. (2003) A molecular phylogeny of the Littorininae (Gastropoda: Littorinidae): unequal evolutionary rates, morphological parallelism, and biogeography of the Southern Ocean. Molecular Phylogenetics and Evolution, 28, 60–86.