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Type: Articles
Published: 2007-03-12
Page range: 1–26
Abstract views: 28
PDF downloaded: 15

DNA Barcoding: Mixed results for big-headed flies (Diptera: Pipunculidae)

Invertebrate Biodiversity, Agriculture and Agri-Food Canada, 960 Carling Avenue, K.W. Neatby Building, Ottawa, ON, K1A 0C6, Canada
State Natural History Collections Dresden, Museum of Zoology, Königsbrücker Landstrasse 159, D-01109 Dresden, Germany;
Finnish Museum of Natural History, Entomology Department, PO Box 26 (Teollisuuskatu 23), FI-00014, University of Helsinki, Finland
Pipunculidae Diptera DNA Barcoding phylogeny mitochondrial rDNA <i>cox1</i> gene COI molecular systematics morphology total evidence

Abstract

Sequence data from 658 base pairs of mitochondrial cytochrome c oxidase I (cox1) were analysed for 28 described species of Pipunculidae (Diptera) in an effort to test the concept of DNA Barcoding on this family. Two recently revised but distantly related pipunculid lineages with presumed different evolutionary histories were used for the test (Clistoabdominalis Skevington, 2001 and Nephrocerus Zetterstedt, 1838). An effort was made to test the concept using sister taxa and morphologically similar sibling species swarms in these two genera. Morphological species concepts for Clistoabdominalis taxa were either supported by cox1 data or found to be too broad. Most of the discordance could be accounted for after reassessing morphological characters. In these cases, the molecular data were invaluable in assisting taxonomic decision-making. The radiation of Nearctic species of Nephrocerus could not be diagnosed using cox1. The ability of cox1 to recover phylogenetic signal was also tested on Clistoabdominalis. Morphological data for Clistoabdominalis were combined with the molecular data set. The pipunculid phylogeny from molecular data closely resembles the published phylogeny based on morphology. Partitioned Bremer support is used to localize areas of conflict between the datasets.

References

  1. Aczél, M.L. (1948) Grundlagen einer monographie der Dorilaiden (Diptera). Dorilaiden-Studien VI. Acta Zoologica Lilloana, 6, 5–168.

    Ball, S.L., Hebert, P.D.N., Burian, S.K. & Webb, J.M. (2005) Biological identifications of mayflies (Ephemeroptera) using DNA barcodes. Journal of the North American Benthological Society, 24, 508–524.

    Barrett, R.D.H. & Hebert, P.D.N. (2005) Identifying spiders through DNA barcodes. Canadian Journal of Zoology, 83, 481–491.

    Bremer, K. (1994) Branch support and tree stability. Cladistics, 10, 295–304.

    Caterino, M.S., Cho, S. & Sperling, F.A.H. (2000) The current state of insect molecular systematics: a thriving Tower of Babel. Annual Review of Entomology 45, 1–54.

    Dunn, C.P. (2003) Keeping taxonomy based in morphology. Trends in Ecology and Evolution, 18, 270–271.

    Evenhuis, N.L. & Samuelson, G.A. (2004) The insect and spider collections of the World website. Bishop Museum, Entomology. Available from: http://hbs.bishopmuseum.org/codens/ (Date of access 6 May 2006).

    Farris, J.S., Källersjo, M., Kluge, A.G. & Bult, C. (1994) Testing significance of incongruence. Cladistics, 10, 315–319.

    Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783–791.

    Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294–299.

    Gest, H. (1999) Bacterial classification and taxonomy: A "primer" for the new millenium. Microbiology Today, 26, 70– 72.

    Hajibabaei, M., deWaard, J.R., Ivanova, N.V., Ratnasingham, S., Dooh, R.T., Kirk, S.L., Mackie, P.M. & Hebert, P.D.N. (2005) Critical factors for assembling a high volume of DNA barcodes. Philosophical Transactions of the Royal Society B: Biological Sciences, 360, 1959–1967.

    Hajibabaei, M., Janzen, D.H., Burns, J.M., Hallwachs, W. & Hebert, P.D.N. (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences of the United States of America, 103, 968– 971.

    Hebert, P.D.N., Cywinska, A., Ball, S.L. & deWaard, J.R. (2003a) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London (B), 270, 313–322.

    Hebert, P.D.N. & Gregory, T.R. (2005) The promise of DNA barcoding for taxonomy. Systematic Biology, 54, 852–859.

    Hebert, P.D.N., Penton, E.H., Burns, J.M., Janzen, D.H. & Hallwachs, W. (2004a) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America, 101, 14812–14817.

    Hebert, P.D.N., Ratnasingham, S. & deWaard, J.R. (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London, Series B, 270, S596–599.

    Hebert, P.D.N., Stoeckle, M.Y., Zemlak, T.S. & Francis, C.M. (2004b) Identification of birds through DNA barcodes. PLoS Biology, 2, 1657–1663.

    Hogg, I.D. & Hebert, P.D.N. (2004) Biological identification of springtails (Hexapoda: Collembola) from the Canadian Arctic, using mitochondrial DNA barcodes. The Canadian Journal of Zoology, 82, 749–754.

    Janzen, D.H., Hajibabaei, M., Burns, J.M., Hallwachs, W., Remigio, E. & Hebert, P.D.N. (2005) Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding. Philosophical Transactions of the Royal Society B: Biological Sciences, 360, 1835–1845.

    Jervis, M.A. (1992) A taxonomic revision of the pipunculid fly genus Chalarus Walker, with particular reference to the European fauna. Zoological Journal of the Linnean Society, 105, 243–352.

    Kaila, L. & Ståhls, G. (2006) DNA barcodes: Evaluating the potential of COI to differentiate closely related species of Elachista (Lepidoptera: Gelechioidea: Elachistidae) from Australia. Zootaxa, 1170, 1–26.

    Kehlmaier, C. (2005) Taxonomic revision of European Eudorylini (Insecta, Diptera, Pipunculidae). Verhandlungen des Naturwissenschaftlichen Vereins in Hamburg, 41, 45–353.

    Koenig, D.P. & Young, C.W. (2007) First observation of parasitic relations between big-headed flies, Nephrocerus Zetterstedt (Diptera: Pipunculidae) and crane flies, Tipula Linnaeus (Diptera: Tupulidae: Tipulinae), with larval and puparial descriptions for the genus Nephrocerus. Proceedings of the Entomological Society of Washington, 109, 52– 65.

    Lipscomb, D., Platnick, N. & Wheeler, Q. (2003) The intellectual content of taxonomy: a comment on DNA taxonomy. Trends in Ecology and Evolution, 18, 65–66.

    Nixon, K.C. & Carpenter, J.M. (1994) On outgroups. Cladistics, 9, 413–426.

    Prendini, L. (2005) Comment on "Identifying spiders through DNA barcodes". Canadian Journal of Zoology, 83, 498– 504.

    Proudlove, G. & Wood, P.J. (2003) The blind leading the blind: cryptic subterranean species and DNA taxonomy. Trends in Ecology and Evolution, 18, 272–273.

    Rafael, J.A. & De Meyer, M. (1992) Generic classification of the family Pipunculidae (Diptera): a cladistic analysis. Journal of Natural History, 26, 637–658.

    Scheffer, S.J., Lewis, M.L. & Joshi, R.C. (2006) DNA Barcoding Applied to Invasive Leafminers (Diptera: Agromyzidae) in the Philippines. Annals of the Entomological Society of America, 99, 204–210.

    Seberg, O., Humphries, C.J., Knapp, S., Stevenson, D.W., Petersen, G., Scharff, N. & Andersen, N.M. (2003) Shortcuts in systematics? A commentary on DNA-based taxonomy. Trends in Ecology and Evolution, 18, 63–65.

    Skevington, J.H. (2001) Revision of Australian Clistoabdominalis (Diptera: Pipunculidae). Invertebrate Taxonomy, 15, 695–761.

    Skevington, J.H. (2005) Revision of Nearctic Nephrocerus Zetterstedt (Diptera: Pipunculidae). Zootaxa, 977, 1–36.

    Skevington, J.H. (2006) Revision of Fijian Collinias Aczél (Diptera: Pipunculidae). Bishop Museum Occasional Papers: Fiji Arthropods. Submitted.

    Skevington, J.H., Goolsby, J.A. & Setamou, M. (2007) New Records of Pipunculidae attacking Proconiine sharpshooters – the implications for parasitism of Homalodisca coagulata (Auchenorrhyncha: Cicadellidae: Proconiini). Southwestern Entomologist. Submitted.

    Skevington, J.H. & Yeates, D.K. (2000) Phylogeny of the Syrphoidea (Diptera) inferred from mtDNA sequences and morphology with particular reference to classification of the Pipunculidae (Diptera). Molecular Phylogenetics and Evolution, 16, 212–224.

    Skevington, J.H. & Yeates, D.K. (2001) Phylogenetic classification of Eudorylini (Diptera: Pipunculidae). Systematic Entomology, 26, 421–452.

    Smith, I.M., Fisher, B.L., & Hebert, P.D.N. (2005) DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: The ants of Madagascar. Philosophical Transactions of the Royal Society B: Biological Sciences, 360, 1825–1834.

    Smith, M.A., Woodley, N.E., Janzen, D.H., Hallwachs, W. & Hebert, P.D.N. (2006) DNA barcodes reveal cryptic hostspecificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proceed ings of the National Academy of Sciences of the United States of America, 103, 3657–3662.

    Sorenson, M.D. (1999) TreeRot, version 2c. Boston University.

    Sperling, F. (2003) DNA Barcoding: Deus ex Machina. Newsletter of the Biological Survey of Canada (Terrestrial Arthropods), 22, 50–53.

    Swofford, D.L. (2001) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0b10. Sinauer Associates, Inc.

    Tautz, D., Arctander, P., Minelli, A., Thomas, R.H. & Vogler, A.P. (2003) A plea for DNA taxonomy. Trends in Ecology and Evolution, 18, 70–74.

    Theron, J. & Cloete, T.E. (2000) Molecular Techniques for Determining Microbial Diversity and Community Structure in Natural Environments. Critical Reviews in Microbiology, 26, 37–57.

    Vandamme, P., Pot, B., Gillis, M., de Vos, P., Kersters, K. & Swings, J. (1996) Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiological Reviews, 60, 407–438.

    Ward, R.D., Zemlak, T.S., Innes, B.H., Last, P.R. & Hebert, P.D.N. (2005) DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society B: Biological Sciences, 360, 1847–1857.

    Will, K.W. & D. Rubinoff. (2004) Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics, 20, 47–55.