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Type: Monograph
Published: 2019-09-30
Page range: 1–75
Abstract views: 142
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Revision of the subgenus Phortica (sensu stricto) (Diptera, Drosophilidae) from East Asia, with assessment of species delimitation using DNA barcodes

Department of Entomology, South China Agricultural University, Guangzhou, 510642, China
Department of Entomology, South China Agricultural University, Guangzhou, 510642, China
Center for General Education, National Taiwan University, Taipei, 10617, Taiwan
Department of Entomology, South China Agricultural University, Guangzhou, 510642, China
Department of Entomology, South China Agricultural University, Guangzhou, 510642, China
Department of Entomology, South China Agricultural University, Guangzhou, 510642, China
Diptera drosophilid species delimitation Steganinae taxonomy China

Abstract

A total of 50 (43 known and seven new) species in the subgenus Phortica (sensu stricto) were surveyed and (re)described from China: P. bicornuta (Chen & Toda, 1997); P. bipartita (Toda & Peng, 1992); P. biprotrusa (Chen & Toda, 1998); P. cardua (Okada, 1977); P. chi (Toda & Sidorenko, 1996); P. conifera (Okada, 1977); P. eparmata (Okada, 1977); P. eugamma (Toda & Peng, 1990); P. excrescentiosa (Toda & Peng, 1990); P. fangae (Máca, 1993); P. flexuosa (Zhang & Gan, 1986); P. foliata (Chen & Toda, 1997); P. gamma (Toda & Peng, 1990); P. gigas (Okada, 1977); P. glabtabula Chen & Gao, 2005; P. hainanensis (Chen & Toda, 1998); P. hongae (Máca, 1993); P. huazhii Cheng & Chen, 2008; P. iota (Toda & Sidorenko, 1996); P. jadete Zhu, Cao & Chen, 2018; P. kappa (Máca, 1977); P. lambda (Toda & Peng, 1990); P. latifoliacea Chen & Watabe, 2008; P. magna (Okada, 1960); P. okadai (Máca, 1977); P. omega (Okada, 1977); P. orientalis (Hendel, 1914); P. pangi Chen & Wen, 2005; P. paramagna (Okada, 1971); P. perforcipata (Máca & Lin, 1993); P. pi (Toda & Peng, 1990); P. protrusa (Zhang & Shi, 1997); P. pseudopi (Toda & Peng, 1990); P. pseudotau (Toda & Peng, 1990); P. psi (Zhang & Gan, 1986); P. rhagolobos Chen & Gao, 2008; P. saeta (Zhang & Gan, 1986); P. setitabula Chen & Gao, 2005; P. subradiata (Okada, 1977); P. tau (Toda & Peng, 1990); P. uncinata Chen & Gao, 2005; P. unipetala Chen & Wen, 2005; P. allomega Gong & Chen, sp. nov.; P. archikappa Gong & Chen, sp. nov.; P. dianzangensis Gong & Chen, sp. nov.; P. imbacilia Gong & Chen, sp. nov.; P. liukuni Gong & Chen, sp. nov.; P. tibeta Gong & Chen, sp. nov.; and P. xianfui Gong & Chen, sp. nov. In addition, seven new synonyms were recognized: P. acongruens (Zhang & Shi, 1997), syn. nov.; P. antillaria (Chen & Toda, 1997), syn. nov.; P. kukuanensis Máca, 2003, syn. nov.; P. linae (Máca & Chen, 1993), syn. nov.; P. shillongensis (Singh & Gupta, 1979), syn. nov.; P. takadai (Okada, 1977), syn. nov.; and P. watanabei (Máca & Lin, 1993), syn. nov. A key to all Asian species (except for the eparmata species complex) of this subgenus was provided. All currently available DNA barcode (partial mitochondrial cytochrome c oxidase subunit I (COI) gene) sequences of this subgenus (217 sequences of 54 species) are employed in a molecular analysis using different species delimitation methods. The results indicate that approximately 68.5% (37 of 54 spp.) of Phortica (s. str.) species could be clearly distinguished from closely related morphospecies or cryptic species.

 

References

  1. An, K.Y., Cao. H.L., Wang, X.L. & Chen, H.W. (2015) The subgenus Ashima (Diptera, Drosophilidae, Phortica) from China, with DNA barcoding and descriptions of three new species. Systematic and Biodiversity, 13, 42–51.

    https://doi.org/10.1080/14772000.2014.968235

    Bächli, G., Vilela, C.R., Escher, S.A. & Saura, A. (2004) The Drosophilidae (Diptera) of Fennoscandia and Denmark. In: Fauna Entomologica Scandinavica. Vol. 39. Brill, Leiden and New York, 362 pp.

    Cao, H.L., Wang, X.L., Gao, J.J., Prigent, S.R., Watabe, H., Zhang, Y.P. & Chen, H.W. (2011) Phylogeny of the African and Asian Phortica (Drosophilidae) deduced from nuclear and mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 61, 677–685.

    https://doi.org/10.1016/j.ympev.2011.08.002

    Chen, H.W. & Máca, J. (2012) Ten new species of the genus Phortica from the Afrotropical and Oriental regions (Diptera: Drosophilidae). Zootaxa, 3478, 493–509.

    Chen, H.W. & Toda, M.J. (1997) Amiota (Phortica) magna species-complex, with descriptions of three new species from China (Diptera, Drosophilidae). Japanese Journal of Entomology, 65, 784–792.

    Chen, H.W. & Toda, M.J. (1998) Amiota (Phortica) omega species–complex, with descriptions of two new species from southern China (Diptera: Drosophilidae). Entomological Science, 1, 403–407.

    Chen, H.W. & Toda, M.J. (2001) A revision of the Asian and European species in the subgenus Amiota Loew (Diptera, Drosophilidae) and the establishment of species-groups based on phylogenetic analysis. Journal of Natural History, 35, 1517–1563.

    https://doi.org/10.1080/002229301317067665

    Chen, H.W., Gao, J.J. & Wen, S.Y. (2005) Species diversity of the genus Phortica Schiner in Yunnan, China, with descriptions of nine new species (Diptera, Drosophilidae). Journal of Natural History, 39, 3951–3978.

    https://doi.org/10.1080/00222930500533534

    Chen, H.W., Toda, M.J., Lakim, M.B. & Mohamed, M.B. (2007) The Phortica sensu stricto (Insecta: Diptera: Drosophilidae) from Malaysia. The Raffles Bulletin of Zoology, 55, 23–41.

    Cheng, Y., Gao, J.J., Watabe, H. & Chen, H.W. (2008) Revision of the genus Phortica Schiner 1862 in China (Diptera: Drosophilidae). Zoological Studies, 47, 614–632.

    Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29, 1969–1973.

    https://doi.org/10.1093/molbev/mss075

    Dwivedi, Y.N., Singh, B.K. & Gupta, J.P. (1979) Further addition to the Indian fauna of Drosophilidae. Oriental Insects, 13, 61–74.

    https://doi.org/10.1080/00305316.1979.10433543

    Fallén, J.C. (1823) Sveciae, Geomyzides. Litteris Berlingianis, Lundae, 8 pp.

    Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294–299.

    Fu, Z., Toda, M.J., Li, N.N., Zhang, Y.P. & Gao, J.J. (2016) A new genus of anthophilous drosophilids, Impatiophila (Diptera, Drosophilidae): morphology, DNA barcoding and molecular phylogeny, with descriptions of thirty-nine new species. Zootaxa, 4120 (1), 1–100.

    https://doi.org/10.11646/zootaxa.4120.1.1

    Gong, L. & Chen, H.W. (2018) The genus Apsiphortica from China with DNA barcoding information (Diptera: Drosophilidae). Annales de la Société entomologique de France, New Series, 54, 111–118.

    https://doi.org/10.1080/00379271.2017.1412809

    Gong, L., Zhu, L. & Chen, H.W. (2018) Six new species of the subgenera Alloparadisa and Ashima (Diptera: Drosophilidae: Phortica) from Yunnan, China, with DNA barcoding information. Annales de la Société entomologique de France, New Series, 54, 434–446.

    https://doi.org/10.1080/00379271.2018.1491327

    He, X.F., Gao, J.J., Cao, H.Z., Zhang, X.L. & Chen, H.W. (2009) Taxonomy and molecular phylogeny of the Phortica hani species complex (Diptera: Drosophilidae). Zoological Journal of the Linnean Society, 157, 359–372.

    https://doi.org/10.1111/j.1096-3642.2009.00516.x

    Hendel, F. (1914) H. Sauter's Formosa-Ausbeute. Acalyptrate Musciden (Dipt.) III. Supplementa entomologica, 3, 90–117.

    Huang, J. & Chen, H.W. (2016) The genus Leucophenga (Diptera, Drosophilidae), part VI: the argentata species group from the East Asia, with morphological and molecular evidence. Zootaxa, 4161 (2), 207–227.

    https://doi.org/10.11646/zootaxa.4161.2.4

    Huang, J., Li, T. & Chen, H.W. (2014) The genus Leucophenga (Diptera, Drosophilidae), part IV: the ornata species group from the East Asia, with morphological and molecular evidence (II). Zootaxa, 3893 (1), 1–55.

    https://doi.org/10.11646/zootaxa.3893.1.1

    Huang, J., Li, T., Gao, J.J. & Chen, H.W. (2013) The genus Leucophenga (Diptera, Drosophilidae), part II: the ornata species group from the Oriental region with morphological and molecular evidence (I). Zootaxa, 3701 (2), 101–147.

    https://doi.org/10.10.11646/zootaxa.3701.2.1

    Huang, J., Su, Y.R. & Chen, H.W. (2017) The genus Leucophenga (Diptera, Drosophilidae), part VII: the subpollinosa species group from China, with morphological and molecular evidence. Zootaxa, 4247 (3), 201–245.

    https://doi.org/10.11646/zootaxa.4247.3.1

    Huang, J., Wang, N.N., Zhang, Y. & Chen, H.W. (2018a) Stegana (Oxyphortica) convergens species group (Diptera: Drosophilidae) from the Oriental region, with morphological and molecular evidence. Journal of Natural History, 52, 1473–1492.

    https://doi.org/10.1080/00222933.2018.1478010

    Huang, J., Wang, Y.L., O’Grady, P.M., Su, Y.R. & Chen, H.W. (2018b) The genus Leucophenga (Diptera, Drosophilidae), part VIII: twenty-one species from the Oriental region, with morphological and molecular evidence. Zootaxa, 4503 (1), 1–70.

    https://doi.org/10.11646/zootaxa.4503.1.1

    Kapli, P., Lutteropp, S., Zhang, J., Kobert, K., Pavlidis, P., Stamatakis, A. & Flouri, T. (2017) Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics, 33, 1630–1638.

    https://doi.org/10.1093/bioinformatics/btx025

    Katoh, T.K., Zhang, G., Zhou, C.J. & Gao, J.J. (2018a)Taxonomy of the Hirtodrosophila melanderi species group (Diptera: Drosophilidae), with descriptions of four new species from southwestern China. Zootaxa, 4422 (3), 345–365.

    https://doi.org/10.11646/zootaxa.4422.3.2

    Katoh, T.K., Zhang, G., Toda, M.J., Zhang, W.X. & Gao, J.J. (2018b)The Lordiphosa denticeps species group (Diptera: Drosophilidae) in China, with redescriptions of four known species and descriptions of nine new species. Zootaxa, 4471 (1), 37–75.

    https://doi.org/10.11646/zootaxa.4471.1.2

    Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870–1874.

    https://doi.org/10.1093/molbev/msw054

    Li, B.X., Zhang, Y. & Chen, H.W. (2019) Nine new species of the subgenus Stegana (Steganina) from China, with DNA barcoding information (Diptera: Drosophilidae). Zootaxa, 4576 (1), 81–108.

    https://doi.org/10.11646/zootaxa.4576.1.4

    Lu, J.M., Zhang, Y. & Chen, H.W. (2018) Integrative taxonomy of the genus Pseudostegana (Diptera, Drosophilidae) from China, with descriptions of eleven new species. PeerJ, 6, e5160.

    https://doi.org/10.7717/peerj.5160

    Máca, J. (1977) Revision of Palaearctic species of Amiota subgenus Phortica (Diptera, Drosophilidae). Acta Entomologica Bohemoslovaca, 74, 115–130.

    Máca, J. (2003) Taxonomic notes on the genera previously classified in the genus Amiota Loew (Diptera, Drosophilidae, Steganinae). Acta Universitatis Carolinae Biologica, 47, 247–274.

    Máca, J. & Lin, F.J. (1993) The Drosophilidae of Taiwan: genus Amiota subgenus Phortica. Bulletin of the Institute of Zoology, Academia Sinica, 32, 171–183.

    Machado, C.D.B., Ishizuka, T.K., Freitas, P.D.D, Valiati, V.H. & Galetti, P.M. (2017) DNA barcoding reveals taxonomic uncertainty in Salminus (Characiformes). Systematics and Biodiversity, 15, 372–382.

    https://doi.org/10.1080/14772000.2016.1254390

    McAlpine, J.F. (1981) Morphology and terminology—adults. In: McAlpine, J.F., Peterson, B.V., Shewell, G.E., Teskey, H.J., Vockeroth, J.R. & Wood, D.M. (Eds.), Manual of Nearctic Diptera. Vol. 1. Agriculture Canada Research Branch Monograph 27. Biosystematics Research Institute, Ottawa, Ontario, pp. 9–63.

    Moulton, M., Song, H. & Whiting, M.F. (2010) Assessing the effects of primer specificity on eliminating numt coamplification in DNA barcoding: a case study from Orthoptera (Arthropoda: Insecta). Molecular Ecology Resources, 10, 615–627.

    https://doi.org/10.1111/j.1755-0998.2009.02823.x

    Nguyen, L.T., Schmidt, H.A., von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies, Molecular Biology and Evolution, 32, 268–274.

    https://doi.org/10.1093/molbev/msu300

    Okada, T. (1960) On the Japanese species of the genus Amiota Loew (Diptera, Drosophilidae). Mushi, 34, 89–102.

    Okada, T. (1971) A revision and taxometric analysis of the genus Amiota Loew of Japan and adjacent countries (Diptera, Drosophilidae). Kontyû, 39, 82–98.

    Okada, T. (1977) The subgenus Phortica Schiner of the genus Amiota Loew of Japan and the Oriental region, with reference to anti-Burla’s rule (Diptera, Drosophilidae). Bulletin of the Biogeographical Society of Japan, 32, 17–31.

    Perez, K.E., Defreitas, N., Slapcinsky, J., Minton, R.L., Anderson, F.E. & Pearce, T.A. (2014) Molecular phylogeny, evolution of shell shape, and DNA barcoding in Polygyridae (Gastropoda: Pulmonata), an endemic North American clade of land snails. American Malacological Bulletin, 32, 1–31.

    https://doi.org/10.4003/006.032.0103

    Puillandre, N., Lambert, A., Brouillet, S. & Achaz, G. (2012) ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology, 21, 1864–1877.

    https://doi.org/10.1111/j.1365-294X.2011.05239.x

    Rambaut, A., Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67, 901–904.

    https://doi.org/10.1093/sysbio/syy032

    Schiner, I.R. (1862) Vorläufiger Commentar zum dipterologischen Theile der “Fauna Austriaca”. Wiener Entomologische Monatschrift, 6, 428–436.

    Song, C., Lin, X.L., Wang, Q. & Wang, X.H. (2017) DNA barcodes successfully delimit morphospecies in a superdiverse insect genus. Zoologica Scripta, 47, 311–324.

    https://doi.org/10.1111/zsc.12284

    Toda, M.J. & Peng, T.X. (1990) Eight new species of the subgenus Phortica (Diptera: Drosophilidae, Amiota) from Guangdong Province, southern China. Entomotaxonomia, 12, 41–55.

    Toda, M.J. & Peng, T.X. (1992) Some species of the subfamily Steganinae (Diptera: Drosophilidae) from Guangdong Province, southern China. Annales de la Société entomologique de France (New Series), 28, 201–213.

    Toda, M.J., Sidorenko, V.S., Watabe, H., Kholin, S.K. & Vinokurov, N.N. (1996) A revision of the Drosophilidae (Diptera) in East Siberia and Russian Far East: taxonomy and biogeography. Zoological Science, 13, 455–477.

    https://doi.org/10.2108/zsj.13.455

    Wang, B.C., Park, J., Watabe, H., Gao, J.J., Xiangyu, J.G., Aotsuka, T., Chen, H.W. & Zhang, Y.P. (2006) Molecular phylogeny of the Drosophila virilis section (Diptera: Drosophilidae) based on mitochondrial and nuclear sequences. Molecular Phylogenetics and Evolution, 40, 484–500.

    https://doi.org/10.1016/j.ympev.2006.03.026

    Wang, N.N., Zhang, Y., Cheng, Y. & Chen, H.W. (2017) Nine new species of the subgenus Stegana (Oxyphortica) from the Oriental region, with morphological and molecular evidence based on Chinese species (Diptera: Drosophilidae). Journal of Natural History, 51, 1943–1970.

    https://doi.org/10.1080/00222933.2017.1360960

    Wheeler, M.R. (1952) The Drosophilidae of the Nearctic Region, exclusive of the genus Drosophila. The University of Texas Publication, 5204, 162–218.

    Yang, Z.H. & Rannala, B. (2017) Bayesian species identification under the multispecies coalescent provides significant improvements to DNA barcoding analyses. Molecular Ecology, 26, 3028–3036.

    https://doi.org/10.1111/mec.14093

    Zhang, J., Kapli, P., Pavlidis, P. & Stamatakis, A. (2013) A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29, 2869–2876.

    https://doi.org/10.1093/bioinformatics/btt499

    Zhang, W.X. & Gan, Y.X. (1986) Description of eight new species of drosophilid flies from Kunming (Diptera, Drosophilidae). Zoological Research, 7, 351–365. [in Chinese with English summary]

    Zhang, W.X. & Shi, L.M. (1997) Subgenus Phortica of genus Amiota in Hengduan Mountains region, China, with descriptions of three new species (Diptera: Drosophilidae). Zoological Research, 18, 367–375. [in Chinese with English summary]

    Zhang, Y., Li, T. & Chen, H.W. (2016) The Stegana (sensu stricto) from China, with morphological and molecular evidence (Diptera: Drosophilidae). Systematics and Biodiversity, 14, 118–130.

    https://doi.org/10.1080/14772000.2015.1099574

    Zhao, F., Gao, J.J. & Chen, H.W. (2009) Taxonomy and molecular phylogeny of the Asian Paraleucophenga Hendel (Diptera: Drosophilidae). Zoological Journal of the Linnean Society, 155, 616–629.

    https://doi.org/10.1111/j.1096-3642.2008.00450.x

    Zhou, L. & Chen, H.W. (2015) The genus Leucophenga (Diptera, Drosophilidae), part V: the mutabilis species group from East Asia, with morphological and molecular evidence. Zootaxa, 4006 (1), 40–58.

    https://doi.org/10.11646/zootaxa.4006.1.2

    Zhu, L., Cao, H.L. & Chen, H.W. (2018) The Phortica eparmata species complex (Diptera, Drosophilidae) from the Oriental region, with DNA barcoding information of Chinese species. European Journal of Taxonomy, 403, 1–18.

    https://doi.org/10.5852/ejt.2018.403