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Type: Article
Published: 2019-09-18
Page range: 407–419
Abstract views: 143
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New records of Swiftia (Cnidaria, Anthozoa, Octocorallia) from off the Pacific Costa Rican margin, including a new species from methane seeps

Centro de Investigación en Ciencias del Mar y Limnología, and Escuela de Biología, Universidad de Costa Rica, San Pedro, 11501-2060 San José, Costa Rica Centro de Investigación en Estructuras Microscópicas, Universidad de Costa Rica, and Smithsonian Tropical Research Institute, P.O. Box 0843-03092, Panama, Republic of Panama
Scripps Institution of Oceanography, UC San Diego, La Jolla CA, 92093-0202 USA
Department of Biology, Temple University, Philadelphia, PA, USA
Centro de Investigación en Ciencias del Mar y Limnología, and Escuela de Biología, Universidad de Costa Rica, San Pedro, 11501-2060 San José, Costa Rica
Department of Biology, Temple University, Philadelphia, PA, USA
Coelenterata Carbonate mounds gorgonian methane seeps Plexauridae Swiftia taxonomy

Abstract

Exploration of the deep sea off the Pacific margin of Costa Rica has resulted in the discovery of a number of new species and reports for the region. Here, we report on the occurrence of the octocoral genus Swiftia, and describe a new species collected by the Alvin submersible off the Pacific coast of Costa Rica. The new species has been observed at around 1000 m depth, growing on authigenic carbonates near methane seeps. Swiftia sahlingi sp. nov. is characterised by having bright red colonies that are with limited branching, with slightly raised polyp-mounds, thin coenenchyme mainly composed of long warty spindles, and conspicuous plates. A molecular phylogenetic analysis supports the differences between this new taxon and the closest Swiftia species. The new species represents the first record of the genus from Costa Rica and in fact for the Eastern Tropical Pacific.

 

References

  1. Bayer, F.M. (1956) Octocorallia: In: Moore, R.C. (Ed.), Treatise on Invertebrate Paleontology. Part F. Coelenterata. Geological Society of America and University of Kansas Press, Lawrence, Kansas, pp. 163–231.

    Bayer, F.M. (1981) Key to the genera of Octocorallia exclusive of Pennatulacea (Coelenterata: Anthozoa) with diagnoses of new taxa. Proceedings of the Biological Society of Washington, 94, 902–947.

    Bayer, F.M. (1991) Thelogorgia, a new genus of gorgonacean octocorals, with descriptions of four new species from the Western Atlantic. Bulletin of Marine Science, 49 (1–2), 506–537.

    Bayer, F.M., Grasshoff, M. & Verseveldt, J. (1983) Illustrated Trilingual Glossary of Morphological and Anatomical Terms Applied to Octocorallia. EJ Brill, Leiden, 74 pp.

    Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C.-H., Xie, D., Suchard, M.A., Rambaut, A. & Drummond, A.J. (2014) BEAST 2: A software platform for Bayesian Evolutionary Analysis. PLoS Computational Biology, 10, e1003537.

    https://doi.org/10.1371/journal.pcbi.1003537

    Bilewitch, J.P. & Degnan, S.M. (2011) A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function. BMC Evolutionary Biology, 11, 228.

    Breedy, O. & Guzman, H.M. (2002) A revision of the genus Pacifigorgia (Coelenterata: Octocorallia: Gorgoniidae). Proceedings of the Biological Society of Washington, 115, 782–839.

    Breedy, O., Cairns, S.D. & Häussermann, V. (2015) A new alcyonacean octocoral (Cnidaria, Anthozoa, Octocorallia) from Chilean fjords. Zootaxa, 3919 (2), 327–334.

    https://doi.org/10.11646/zootaxa.3919.2.5

    Cairns, S.D., Stone, R.P., Berntson, E.A. & Pomponi, S.A. (2017) Species discovery of deep water corals and sponges in U.S. waters (2007–2016). In: Hourigan, T.F., Etnoyer, P.J. & Cairns, S.D. (Eds.), The State of Deep Sea Coral and Sponge Ecosystems of the United States. NOAA Technical Memorandum NMFS OHC4. National Oceanic and Atmospheric Administration, Silver Spring, Maryland, pp.1–18.

    Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) Jmodeltest 2: More models, new heuristics and parallel computing. Nature Methods, 9, 772.

    https://doi.org/10.1038/nmeth.2109

    Deichmann, E. (1936) The Alcyonaria of the western part of the Atlantic Ocean. Memoirs of the Museum of Comparative Zoölogy at Harvard College, Cambridge, Massachusetts, 53, 1–31, 37 pls.

    https://doi.org/10.5962/bhl.title.49348

    DeSalle, R., Egan, M.G. & Siddall, M. (2005) The unholy trinity: taxonomy, species delimitation and DNA barcoding. Philosophical Transactions of the Royal Society B, 360, 1905–1916.

    https://doi.org/10.1098/rstb.2005.1722

    Duchassaing, P. & Michelotti, G. (1860) Mémoire sur les Coralliaires des Antilles. Memorie della Reale Accademia delle Scienze di Torino, 19, 279–365.

    Duchassaing, P. & Michelotti, G. (1864) Supplement au mémoire sur les Coralliaires des Antilles. Mémoires de l‘Academie des Sciences de Turin, Series 2, 23, 97–206., 11 pls.

    Ellis, J. & Solander, D. (1786) The Natural History of many curious and uncommon Zoophytes, collected by the late John Ellis and systematically arranged and described by the Daniel Solander. Benjamin White and Son, London, xii + 208 pp., 63 pls.

    https://doi.org/10.5962/bhl.title.2145

    Everett, M.V., Park, L.K., Berntson, E.A., Elz, A.E., Whitmire, C.E., Keller, A.A. & Clarke, M.E. (2016) Large-scale genotyping-by-sequencing indicates high levels of gene flow in the deep-sea octocoral Swiftia simplex (Nutting 1909) on the West Coast of the United States. PLoS ONE, 11 (10), e0165279.

    https://doi.org/10.1371/journal.pone.0165279

    France, S.C. & Hoover, L.L. (2002) DNA sequences of the mitochondrial COI gene have low levels of divergence among deep-sea octocorals (Cnidaria: Anthozoa). Hydrobiologia, 471, 149–155.

    https://doi.org/10.1023/A:1016517724749

    Gray, J.E. (1859) On the arrangement of zoophytes with pinnated tentacles. Annals and Magazine of Natural History, 4, 439–444.

    https://doi.org/10.1080/00222935908697159

    Haeckel, E. (1866) Generelle Morphologie der Organismen. Georg Reimer, Berlin, 1036 pp.

    https://doi.org/10.1515/9783110848281

    Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.

    Harden, D.G. (1979) Intuitive and Numerical Classification of East Pacific Gorgonacea (Octocorallia). Unpublished PhD dissertation, Illinois State University, Illinois, 214 pp.

    Hebert, P.D.N., Cywinska, A., Ball, S.L. & Dewaard, J. (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London B, 270, 313–321.

    https://doi.org/10.1098/rspb.2002.2218

    Horton, T.; Kroh, A.; Ahyong, S.; Bailly, N.; Boyko, C.B.; Brandão, S.N.; Costello, M.J.; Gofas, S.; Hernandez, F.; Holovachov, O.; Mees, J.; Paulay, G.; Rosenberg, G.; Decock, W.; Dekeyzer, S.; Lanssens, T.; Vandepitte, L.; Vanhoorne, B.; Verfaille, K.; Adlard, R.; Adriaens, P.; Agatha, S.; Ahn, K.J.; Akkari, N.; Alvarez, B.; Anderson, G.; Angel, M.V.; Arango, C.; Artois, T.; Atkinson, S.; Bank, R.; Barber, A.; Barbosa, J.P.; Bartsch, I.; Bellan-Santini, D.; Bernot, J.; Berta, A.; Bezerra, T.N.; Bieler, R.; Blanco, S.; Blasco-Costa, I.; Blazewicz, M.; Bock, P.; Böttger-Schnack, R.; Bouchet, P.; Boury-Esnault, N.; Boxshall, G.; Bray, R.; Breure, B.; Bruce, N.L.; Cairns, S.; Cárdenas, P.; Carstens, E.; Chan, B.K.; Chan, T.Y.; Cheng, L.; Churchill, M.; Coleman, C.O.; Collins, A.G.; Corbari, L.; Cordeiro, R.; Cornils, A.; Coste, M.; Crandall, K.A.; Cremonte, F.; Cribb, T.; Cutmore, S.; Dahdouh-Guebas, F.; Daly, M.; Daneliya, M.; Dauvin, J.C.; Davie, P.; De Broyer, C.; De Grave, S.; de Mazancourt, V.; de Voogd, N.J.; Decker, P.; Decraemer, W.; Defaye, D.; d’Hondt, J.L.; Dippenaar, S.; Dohrmann, M.; Dolan, J.; Domning, D.; Downey, R.; Ector, L.; Eisendle-Flöckner, U.; Eitel, M.; Encarnação, S.C.d.; Enghoff, H.; Epler, J.; Ewers-Saucedo, C.; Faber, M.; Feist, S.; Figueroa, D.; Finn, J.; Fišer, C.; Fordyce, E.; Foster, W.; Frank, J.H.; Fransen, C.; Furuya, H.; Galea, H.; Garcia-Alvarez, O.; Garic, R.; Gasca, R.; Gaviria-Melo, S.; Gerken, S.; Gibson, D.; Gibson, R.; Gil, J.; Gittenberger, A.; Glasby, C.; Glover, A.; Gómez-Noguera, S.E.; González-Solís, D.; Gordon, D.; Grabowski, M.; Gravili, C.; Guerra-García, J.M..; Guidetti, R.; Guiry, M.D.; Hadfield, K.A.; Hajdu, E.; Hallermann, J.; Hayward, B.W.; Hendrycks, E.; Herbert, D.; Herrera Bachiller, A.; Ho, J.s.; Hodda, M.; Høeg, J.; Hoeksema, B.; Hooper, J.N.; Houart, R.; Hughes, L.; Hyžný, M.; Iniesta, L.F.M.; Iseto, T.; Ivanenko, S.; Iwataki, M.; Janssen, R.; Jarms, G.; Jaume, D.; Jazdzewski, K.; Jersabek, C.D.; Jóźwiak, P.; Kabat, A.; Kantor, Y.; Karanovic, I.; Karthick, B.; Kim, Y.H.; King, R.; Kirk, P.M.; Klautau, M.; Kociolek, J.P.; Köhler, F.; Kolb, J.; Kotov, A.; Kremenetskaia, A.; Kristensen, R.M.; Kulikovskiy, M.; Kullander, S.; Lambert, G.; Lazarus, D.; Le Coze, F.; LeCroy, S.; Leduc, D.; Lefkowitz, E.J.; Lemaitre, R.; Liu, Y.; Lörz, A.N.; Lowry, J.; Ludwig, T.; Lundholm, N.; Macpherson, E.; Madin, L.; Mah, C.; Mamo, B.; Mamos, T.; Manconi, R.; Mapstone, G.; Marek, P.E.; Marshall, B.; Marshall, D.J.; Martin, P.; Mast, R.; McFadden, C.; McInnes, S.J.; Meidla, T.; Meland, K.; Merrin, K.L.; Messing, C.; Miljutin, D.; Mills, C.; Moestrup, Ø.; Mokievsky, V.; Molodtsova, T.; Monniot, F.; Mooi, R.; Morandini, A.C.; Moreira da Rocha, R.; Moretzsohn, F.; Mortelmans, J.; Mortimer, J.; Musco, L.; Neubauer, T.A.; Neubert, E.; Neuhaus, B.; Ng, P.; Nguyen, A.D.; Nielsen, C.; Nishikawa, T.; Norenburg, J.; O’Hara, T.; Opresko, D.; Osawa, M.; Osigus, H.J.; Ota, Y.; Páll-Gergely, B.; Patterson, D.; Paxton, H.; Peña-Santiago, R.; Perrier, V.; Perrin, W.; Petrescu, I.; Picton, B.; Pilger, J.F.; Pisera, A.B.; Polhemus, D.; Poore, G.C.; Potapova, M., Pugh, P., Read, G., Reich, M., Reimer, J.D., Reip, H., Reuscher, M., Reynolds, J.W., Richling, I., Rimet, F., Ríos, P., Rius, M., Rogers, D.C., Rützler, K., Sabbe, K., Saiz-Salinas, J., Sala, S., Santagata, S., Santos, S., Sar, E., Satoh, A., Saucède, T., Schatz, H., Schierwater, B., Schmidt-Rhaesa, A., Schneider, S., Schönberg, C., Schuchert, P., Senna, A.R., Serejo, C., Shaik, S., Shamsi, S., Sharma, J., Shear, W.A., Shenkar, N., Shinn, A., Short, M., Sicinski, J., Sierwald, P., Simmons, E., Sinniger, F., Sivell, D., Sket, B., Smit, H., Smit, N., Smol, N., Souza-Filho, J.F.., Spelda, J., Sterrer, W., Stienen, E., Stoev, P., Stöhr, S., Strand, M., Suárez-Morales, E., Summers, M., Suppan, L., Suttle, C., Swalla, B.J., Taiti, S., Tanaka, M., Tandberg, A.H., Tang, D., Tasker, M., Taylor, J., Taylor, J., Tchesunov, A., ten Hove, H., ter Poorten, J.J., Thomas, J.D., Thuesen, E.V., Thurston, M., Thuy, B., Timi, J.T., Timm, T., Todaro, A., Turon, X., Tyler, S., Uetz, P., Uribe-Palomino, J., Utevsky, S., Vacelet, J., Vachard, D., Vader, W., Väinölä, R., Van de Vijver, B., van der Meij, S.E., van Haaren, T., van Soest, R.W., Vanreusel, A., Venekey, V., Vinarski, M., Vonk, R., Vos, C., Walker-Smith, G., Walter, T.C., Watling, L., Wayland, M., Wesener, T., Wetzel, C.E., Whipps, C., White, K., Wieneke, U., Williams, D.M., Williams, G., Wilson, R., Witkowski, A., Witkowski, J., Wyatt, N., Wylezich, C., Xu, K., Zanol, J., Zeidler, W. & Zhao, Z. (2019) World Register of Marine Species. VLIZ. Available from: http://www.marinespecies.org (accessed 4 July 2019)

    Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870–1874.

    https://doi.org/10.1093/molbev/msw054

    Kükenthal, W. (1924) Gorgonaria. Das Tierreich. Vol. 47. Walter de Gruyter & Company, Berlin, xxviii + 478 pp.

    Lamouroux, J.V.F. (1816) Histoire des polypiers coralligènes flexibles, vulgairement nommés Zoophytes. Impr. F. Poisson, Caen, 560 pp.

    https://doi.org/10.5962/bhl.title.11172

    Levin, L.A., Orphan, V.J., Rouse G.W., Ussler, W., Rathburn, A.E., Cook, G.S., Goffredi, S.K., Perez, E.M., Waren, A., Grupe, B.M., Chadwick, G. & Strickrott, B. (2012) A hydrothermal seep on the Costa Rica margin: middle ground in a continuum of reducing ecosystems. Proceedings of the Royal Society B, 279, 2580–2588.

    https://doi.org/10.1098/rspb.2012.0205

    Levin, L.A., Mendoza, G.F., Grupe, B.M., Gonzalez, J.P., Jellison, B., Rouse, G.W., Thurber, A.R. & Warén, A. (2015) Biodiversity on the rocks: macrofauna inhabiting authigenic carbonate at Costa Rica methane seeps. PLoS ONE, 10 (8), e0136129.

    https://doi.org/10.1371/journal.pone.0131080

    McFadden, C.S., Tullis, I.D., Hutchinson, M.B., Winner, K. & Sohm, J.A. (2004) Variation in coding (NADH dehydrogenase subunits 2, 3, and 6) and noncoding intergenic spacer regions of the mitochondrial genome in Octocorallia (Cnidaria: Anthozoa). Marine Biotechnology, 6, 516–526.

    https://doi.org/10.1007/s10126-002-0102-1

    McFadden, C.S., France, S.C., Sánchez, J.A. & Alderslade, P. (2006) A molecular phylogenetic analysis of the Octocorallia (Cnidaria: Anthozoa) based on mitochondrial protein–coding sequences. Molecular Phylogenetics and Evolution, 41, 513–27.

    https://doi.org/10.1016/j.ympev.2006.06.010

    McFadden, C.S., Reynolds, A.M. & Janes, M.P. (2014) DNA barcoding of xeniid soft corals (Octocorallia: Alcyonacea: Xeniidae) from Indonesia: species richness and phylogenetic relationships. Systematics and Biodiversity, 12 (2), 247–257.

    https://doi.org/10.1080/14772000.2014.902866

    Madsen, F.J. (1970) Remarks on Swiftia rosea (Grieg) and related species (Coelenterata, Gorgonaria). Steenstrupia, Zoological Museum, University of Copenhagen, 1, 1–10.

    Nutting, C.C. (1909) Alcyonaria of the California coast. Proceedings of the United States National Museum, 35, 681–727.

    https://doi.org/10.5479/si.00963801.35-1658.681

    Opresko, D.M. & Breedy, O. (2010) A new species of antipatharian coral (Cnidaria: Anthozoa: Antipatharia: Schizopathidae) from the Pacific coast of Costa Rica. Proceedings of the Biological Society of Washington, 123, 234–241.

    https://doi.org/10.2988/10-06.1

    Rambaut, A., Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarisation in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67, 901–904.

    https://doi.org/10.1093/sysbio/syy032

    Rubinoff, D., Cameron, S. & Will, K. (2006) A genomic perspective on the shortcomings of mitochondrial DNA for “barcoding” identification. Journal of Heredity, 97, 581–594.

    https://doi.org/10.1093/jhered/esl036

    Sahling, H., Masson, D.G., Ranero, C.R., Hühnerbach, V., Weinrebe, W., Klaucke, I., Bürk, D., Brückmann, W. & Suess, E. (2008) Fluid seepage at the continental margin offshore Costa Rica and southern Nicaragua. Geochemistry, Geophysics, Geosystems, 9, Q05S05.

    https://doi.org/10.1029/2008GC001978

    Sánchez, J.A., McFadden, C.S., France, S.C. & Lasker, H.R. (2003) Molecular phylogenetic analyses of shallow–water Caribbean octocorals. Marine Biology, 142, 975–987.

    https://doi.org/10.1007/s00227-003-1018-7

    Shearer, T.L., Van Oppen, M.J.H., Romano, S.L. & Wörheide, G. (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria), Molecular Ecology, 11, 2475–2487.

    https://doi.org/10.1046/j.1365-294X.2002.01652.x

    Stamatakis, A. (2014) RAxML Version 8: A tool for phylogenetic analysis and post–analysis of large phylogenies. Bioinformatics, 30, 1312–1313.

    https://doi.org/10.1093/bioinformatics/btu033

    Verrill, A.E. (1883) Report on the Anthozoa, and on some additional species dredged by the Blake in 1877–1879, and by the U.S. Fish Commission steamer Fish Hawk in 1880–82. Bulletin of the Museum of Comparative Zoölogy, Harvard, 11, 1–72.

    Verrill, A.E. (1912) The gorgonians of the Brazilian coast. Journal of the Academy of Natural Sciences of Philadelphia, 15, 373–404.

    Verrill, A.E. (1928) Hawaiian shallow-water Anthozoa. Bernice P. Bishop Museum Bulletin, 49, 1–30.

    https://doi.org/10.5962/bhl.title.58574

    Will, K.W., Mishler, B.D. & Wheeler, Q.D. (2005) The perils of DNA barcoding and the need for integrative taxonomy. Systematic Biology, 54, 844–851.

    https://doi.org/10.1080/10635150500354878

    Williams, G.C. & Breedy, O. (2016) A new species of whip-like gorgonian coral in the genus Swiftia from the Gulf of Farallones in Central California, with a key to Eastern Pacific species in California (Cnidaria, Octocorallia, Plexauridae). Proceedings of the California Academy of Sciences, Series 4, 63, 1–13.

    Wright, E.P. & Studer, T. (1889) Report of the Alcyonaria collected by H.M.S. „Challenger“ during the years 1873–1876. Challenger Reports: Zoology, 31, 1–314.