Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2004-08-03
Page range: 1–11
Abstract views: 54
PDF downloaded: 22

A mitochondrial 12S and 16S rRNA phylogeny of critical genera of Phoridae (Diptera) and related families of Aschiza

Department and Museum of Zoology, University of Cambridge, University of Cambridge, Downing Street, Cambridge, CB2 3EJ, ENGLAND
The Natural History Museum, Cromwell Road, London SW7 5BD, ENGLAND. (Current address: Sciences Department, Museum Victoria, GPO Box 666E, Melbourne VIC 3001, Australia
Department and Museum of Zoology, University of Cambridge, University of Cambridge, Downing Street, Cambridge, CB2 3EJ, ENGLAND
Diptera Aschiza Phoridae rRNA sequences phylogeny maximum likelihood Bayesian phylogeny mitochondria mtDNA 12S 16S lsuRNA ssuRNA

Abstract

Phylogenetic analysis of mitochondrial 12S and 16S rRNA gene sequences supports the monophyly of the Phoridae. Within this family the Phorinae clade includes two aberrant termitophilous subfamilies, the Thaumatoxeninae and the Termitoxeniinae, which cluster with Dohrniphora and Diplonevra. These two genera include termitophiles and parasitoids of termites, so we hypothesize that these termitophilous phorids are a monophyletic group. While the data neither refute nor support the assumed monophyly of the Metopininae, the genera of this subfamily were not monophyletic in our analysis, but fell into two subclades that correspond with the tribes Metopinini and Gymnophorini.

References

  1. Austin, J.J., Ross, A.J., Smith, A.B., Fortey, R.A., & Thomas, R.H. (1997) Problems of reproducibility— does geologically ancient DNA survive in amber-preserved insects? Proceedings of the Royal Society of London B, 264, 467–474.

    Borgmeier T. (1968) A catalogue of the Phoridae of the world (Diptera: Phoridea). Studia Entomologica, 11, 1–367.

    Brown, B.V. (1992) Generic revision of Phoridae of the Nearctic Region and phylogenetic classification of Phoridae, Sciadoceridae and Ironomyiidae (Diptera: Phoridea). Memoirs of the Entomological Society of Canada, 164, 1–144.

    Brown, B.V. (1999) Re-evaluation of the fossil Phoridae (Diptera). Journal of Natural History, 33, 1561–1573.

    Brown, B.V. (2004) Revision of the subgenus Udamochiras of Melaloncha bee-killing flies (Diptera: Phoridae: Metopininae). Zoological Journal of the Linnean Society, 140, 1–42.

    Castresana, J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17, 540–552.

    Clary, D.O. & Wolstenholme, D.R. (1985) The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code. Journal of Molecular Evolution, 22, 252–271.

    Collins, K.P. & Wiegmann, B.M. (2002a) Phylogenetic relationships and placement of the Empidoidea (Diptera: Brachycera) based on 28S rDNA and EF-1alpha sequences. Insect Systematics and Evolution, 33, 421–444.

    Collins, K.P. & Wiegmann, B.M. (2002b) Phylogenetic relationships of the lower Cyclorrhapha (Diptera: Brachycera) based on 28S rDNA sequences. Insect Systematics and Evolution, 33, 445–456.

    Cumming, J.M., Sinclair, B.J. & Wood, D.M. (1995) Homology and phylogenetic implications of male genitalia in Diptera-Eremoneura. Entomologica Scandinavica, 26, 120–151.

    De Rijk, P., Caers, A., Van de Peer, Y. & De Wachter, R. (1998) Database on the structure of large ribosomal subunit RNA. Nucleic Acids Research, 26, 183–186.

    Disney R.H.L (1983) A useful new character in the giant genus Megaselia (Diptera: Phoridae) with two new species from Britain. Zeitschrift f¸r Angewandte Zoologie, 70, 225–234.

    Disney, R.H.L. (1992) The ‘missing’ males of the Thaumatoxeninae (Diptera: Phoridae). Systematic Entomology, 17, 55–58.

    Disney, R.H.L. (1994) Scuttle Flies: The Phoridae. Chapman and Hall, London. xii + 467 pp.

    Disney, R.H.L. (2001) Sciadoceridae (Diptera) reconsidered, Fragmenta Faunistica, 44, 309–17.

    Disney, R.H.L. (2003) The dorsal abdominal glands and the higher classification of the Phoridae (Diptera). Zootaxa, 293, 1–16

    Disney, R.H.L. & Cumming, M.S. (1992) Abolition of the alamirinae and ultimate rejection of Wasmann’s theory of hermaphroditism in Termitoxeniinae (Diptera: Phoridae). Bonner Zoologische Beiträge, 43, 145–154

    Disney, R.H.L. & Darlington, J.P.E.C. (2000) Alate termites (Isoptera: Termitidae) parasitized by a scuttle fly (Diptera: Phoridae). Sociobiology, 35, 63–78

    Disney, R.H.L. & Ross, A.J. (1997) Abaristophora and Puliciphora (Diptera: Phoridae) from Dominican amber and revisionary notes on modern species, European Journal of Entomology, 93, 127–135.

    Flook, P.K. & Rowell, C.H. (1997) The effectiveness of mitochondrial rRNA gene sequences for the reconstruction of the phylogeny of an insect order (Orthoptera). Molecular Phylogenetics and Evolution, 8, 177–192

    Gaston K.J. (1991) The magnitude of global insect species richness. Conservation Biology, 5, 283– 296.

    Hickson, R.E., Simon, C., Cooper, A., Spicer, G.S., Sullivan, J. & Penny, D. (1996) Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA. Molecular Biology and Evolution, 13, 150–169

    Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754–755

    Iturralde-Vinent, M.A. & MacPhee, R.D.E. 1996. Age and paleogeographical origin of Dominican amber. Science, 273, 1850–1852.

    Jenner, R.A. (2004) Value of morphological phylogenetics. Accepting partnership by submission? Morphological phylogenetics in a molecular millennium. Systematic Biology, in press.

    Kocher, T.D., Thomas, W.K., Meyer, A., Edwards, S.V., Pääbo, S., Villablanca, F.X. & Wilson, A.C. (1989) Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences, 86, 6196–6200

    Posada, D., Crandall, K.A., Nguyen, M., Demma, J.C. & Viscidi, R.P. (2000) Population genetics of the porB gene of Neisseria gonorrhoeae: different dynamics in different homology groups. Molecular Biology and Evolution, 17, 423–436

    Rohdendorf, B. (1974) The Historical Development of Diptera University of Alberta Press, Edmonton.

    Shimodaira, H. & Hasegawa, M. (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114–1116

    Simmons, M.P., Pickett, K.M. & Miya, M. (2004) How meaningful are Bayesian support values. Molecular Biology and Evolution, 21, 188–199

    Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H. & Flook, P. (1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene-sequences and a compilation of conserved polymerase chain-reaction primers. Annals of the Entomological Society of America, 87, 651–701

    Suzuki, Y., Glazko, G.V., Nei, M. (2002) Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proceedings of the National Academy of Sciences, USA, 99, 16138– 16143.

    Swofford, D.L. (1998) PAUP* Phylogenetic Analysis Using Parsimony (*and Other Methods)., Sinauer Associates, Sunderland, Massachusetts.

    Swofford, D.L., Waddell, P.J., Huelsenbeck, J.P., Foster, P.G., Lewis, P.O., & Rogers, J.S. (2001) Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Systematic Biology, 50, 525–539.

    Telford, M.J., Lockyer, A.E., Cartwright-Finch, C., & Littlewood, D.T.J. (2003) Combined large and small subunit ribosomal RNA phylogenies support a basal position of the acoelomorph flatworms. Proceedings of the Royal Society of London B, 270, 1077–1083

    Walsh, P.S., Metzger, D.A. & Higuchi, R. (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing in forensic material. BioTechniques, 10, 506–513

    Yeates, D.K. & Wiegmann, B.M. (1999) Congruence and Controversy: Toward a Higher-Level Phylogeny of Diptera. Annual Review of Entomology, 44, 397–428

    Zatwarnicki, T. (1996) A new reconstruction of the origin of eremoneuran hypopygium and its implications for classification (Insecta: Diptera). Genus, 7, 103–175