Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2016-03-02
Page range: 219–232
Abstract views: 86
PDF downloaded: 2

A new species of the genus Pachytriton (Caudata: Salamandridae) from Hunan and Guangxi, southeastern China

State Key Laboratory of Genetic Resources and Evolution State, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, Yunnan, China
State Key Laboratory of Genetic Resources and Evolution State, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, Yunnan, China Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming 650204, Yunnan, China
State Key Laboratory of Genetic Resources and Evolution State, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, Yunnan, China
Amphibia Amphibians cryptic diversity Bayes factor species delimitation Pachytriton wuguanfui sp. nov.

Abstract

Despite recent descriptions of multiple new species of the genus Pachytriton (Salamandridae), species richness in this China-endemic newts genus likely remains underestimated. In this study, we describe a new species of Pachytriton from northeastern Guangxi and southern Hunan, southeastern China. Both molecular analyses and morphological characters reveal that the new species can be distinguished from its congeners. The mitochondrial gene tree identified the new lineage highly divergent (uncorrected p-distance > 5.8 % by mitochondrial gene) from currently recognized species and placed it as the sister species of P. xanthospilos and P. changi. Furthermore, a nuclear gene haplotype network revealed a unique haplotype in the new populations. Statistical species delimitation using Bayes factor strongly supported the evolutionary independence of the new species from the closely-related P. xanthospilos. Morphologically, the new species is characterized by a uniformly dark brown dorsum without bright orange dots or black spots; irregular orange blotches on the venter; tips of fingers and toes orange on the dorsal side; moderately developed webs on the side of digits; absence of costal grooves between the axilla and groin; and widely open vomerine tooth series.

 

References

  1. AmphibiaWeb (2015) Information on amphibian biology and conservation. AmphibiaWeb, Berkeley, California. Available from: http://amphibiaweb.org/ (accessed 31 August 2015)

    Baele, G., Lemey, P., Bedford, T., Rambaut, A., Suchard, M.A. & Alekeyenko, A.V. (2012) Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Molecular Biology and Evolution, 29, 2157–2167.
    http://dx.doi.org/10.1093/molbev/mss084

    Bandelt, H.J., Forster, P. & Rohl, A. (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37–48.
    http://dx.doi.org/10.1093/oxfordjournals.molbev.a026036

    Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) JModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772.
    http://dx.doi.org/10.1038/nmeth.2109

    Drummond, A.J. & Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolution Biology, 7, 214.
    http://dx.doi.org/10.1186/1471-2148-7-214

    Heled, J. & Drummond, A.J. (2010) Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution, 27, 570–580.
    http://dx.doi.org/10.1093/molbev/msp274

    Hou, M., Wu, Y., Yang, K., Zheng, S., Yuan, Z. & Li, P. (2014) A missing geographic link in the distribution of the genus Echinotriton (Caudata: Salamandridae) with description of a new species from southern China. Zootaxa, 3895 (1), 89–102.
    http://dx.doi.org/10.11646/zootaxa.3895.1.5

    Frost, D.R. (2015) Amphibian Species of the World: an Online Reference. Version 6.0 American Museum of Natural History, New York, USA. Available from: http://research.amnh.org/herpetology/amphibia/index.html (accessed 31 August 2015)

    Kass, R.E. & Raftery, A.E. (1995) Bayes factors. Journal of the American Statistical Association, 90, 773–795.
    http://dx.doi.org/10.1080/01621459.1995.10476572

    Nishikawa, K., Jiang, J. & Matsui, M. (2011a) Two new species of Pachytriton from Anhui and Guangxi, China (Amphibia: Urodela: Salamandridae). Current Herpetology, 30, 15–31.
    http://dx.doi.org/10.5358/hsj.30.15

    Nishikawa, K., Jiang, J., Matsui, M. & Mo, Y. (2011b) Unmasking (Amphibia: Urodela: Salamandridae), with description of a new species of Pachytriton from Guangxi, China. Current Herpetology, 28, 453–461.
    http://dx.doi.org/10.5358/hsj.31.21

    Nishikawa, K., Matsui, M. & Jiang, J. (2012) A new species of Pachytriton from China (Amphibia: Urodela: Salamandridae). Current Herpetology, 31, 21–27.
    http://dx.doi.org/10.5358/hsj.31.21

    Nishikawa, K., Matsui, M., Wang, B., Yoshikawa, N. & Jiang, J. (2013) Taxonomic relationship of two newt species of Pachytriton recently described from China (Amphibia: Urodela: Salamandridae). Current Herpetology, 32, 150–158.
    http://dx.doi.org/10.5358/hsj.32.150

    Nishikawa, K. & Matsui, M. (2014) Three new species of the salamander genus Hynobius (Amphibia, Urodela, Hynobiidae) from Kyushu, Japan. Zootaxa, 3852 (2), 203–226.
    http://dx.doi.org/10.11646/zootaxa.3852.2.3

    Phimmachak, S., Aowphol, A. & Stuart, B.L. (2015) Morphological and molecular variation in Tylototriton (Caudata: Salamandridae) in Laos, with description of a new species. Zootaxa, 4006 (2), 285–310.
    http://dx.doi.org/10.11646/zootaxa.4006.2.3

    Rambaut, A. & Drummond, A. (2007) Tracer v1.4. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 19 January 2016)

    Ronquist, F. & Huelsenbeck, J.P. (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574.
    http://dx.doi.org/10.1093/bioinformatics/btg180

    Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology, 57, 758–771.
    http://dx.doi.org/10.1080/10635150802429642

    Stephens, M., Smith, N.J. & Donnelly, P. (2001) A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978–989.
    http://dx.doi.org/10.1086/319501

    Stuart, S.N., Chanson, J.S., Cox, N.A., Young, B.E., Rodrigues, A.S.L., Fischman, D.L. & Waller, R.W. (2004) Status and trends of amphibian declines and extinctions worldwide. Science, 306, 17831786.
    http://dx.doi.org/10.1126/science.1103538

    Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731–2739.
    http://dx.doi.org/10.1093/molbev/msr121

    Vieites, D.R., Min, M.S. & Wake, D.B. (2007) Rapid diversification and dispersal during periods of global warming by plethodontid salamanders. Proceedings of the National Academy of Sciences, 104, 19903–19907.
    http://dx.doi.org/10.1073/pnas.0705056104

    Weisrock, D.W., Papenfuss, T.J., Macey, J.R., Litvinchuk, S.N., Polymeni, R., Ugurtas, I.H., Zhao, E., Jowkar, H. & Larson, A. (2006) A molecular assessment of phylogenetic relationships and lineage accumulation rates within the family Salamandridae (Amphibia, Caudata). Molecular Phylogenetics and Evolution, 41, 368–383.
    http://dx.doi.org/10.1016/j.ympev.2006.05.008

    Wu, Y., Jiang, K. & Hanken, J. (2010a) A new species of newt of the genus Paramesotriton (Salamandridae) from southwestern Guangdong, China, with a new northern record of P. longliensis from western Hubei. Zootaxa, 2494, 45–58.

    Wu, Y. & Murphy, R.W. (2015) Concordant species delimitation from multiple independent evidence: A case study with the Pachytriton brevipes complex (Caudata: Salamandridae). Molecular Phylogenetics and Evolution, 92, 108–117.
    http://dx.doi.org/10.1016/j.ympev.2015.06.010

    Wu, Y., Wang, Y. & Hanken, J. (2012a) Comparative osteology of the genus Pachytriton (Caudata: Salamandridae) from southeastern China. Asian Herpetological Research, 3, 83–102.
    http://dx.doi.org/10.3724/SP.J.1245.2012.00083

    Wu, Y., Wang, Y. & Hanken, J. (2012b) New species of Pachytriton (Caudata: Salamandridae) from the Nanling mountain range, southeastern China. Zootaxa, 3388, 1–16.

    Wu, Y., Wang, Y., Jiang, K. & Hanken, J. (2010b) A new newt of the genus Cynops (Caudata: Salamandridae) from Fujian Province, southeastern China. Zootaxa, 2346, 42–52.

    Wu, Y., Wang, Y., Jiang, K. & Hanken, J. (2010c) Homoplastic evolution of external colouration in Asian stout newts (Pachytriton) inferred from molecular phylogeny. Zoological Science, 39, 9–22.
    http://dx.doi.org/10.1111/j.1463-6409.2009.00400.x

    Wu, Y., Wang, Y., Jiang, K. & Hanken, J. (2013) Significance of pre-Quaternary climate change for montane species diversity: insights from Asian salamanders (Salamandridae: Pachytriton). Molecular Phylogenetics and Evolution, 66, 380–390.
    http://dx.doi.org/10.1016/j.ympev.2012.10.011

    Wu, Y., Rovito, S.M., Papenfuss, T.J. & Hanken, J. (2009) A new species of the genus Paramesotriton (Caudata: Salamandridae) from Guangxi Zhuang Autonomous Region, southern China. Zootaxa, 2060, 59–68.

    Xie, W., Lewis, P.O., Fan, Y., Kuo, L. & Chen, M.H. (2011) Improving marginal likelihood estimation for Bayesian phylogenetic model selection. Systematic Biology, 60, 150–160.
    http://dx.doi.org/10.1093/sysbio/syq085

    Yuan, Z., Jiang, K., Ding, L., Zhang, L. & Che, J. (2013) A new newt of the genus Cynops (Caudata: Salamandridae) from Guangdong Province, southeastern China. Asian Herpetological Research, 4, 116−123.
    http://dx.doi.org/10.3724/SP.J.1245.2013.00116

    Yuan, Z., Zhao, H., Jiang, K., Hou, M., He, L., Murphy, R.W. & Che, J. (2014) Phylogenetic relationships of the genus Paramesotriton (Caudata: Salamandridae) with the description of a new species from Qixiling nature reserve, Jiangxi, southeastern China and a key to the species. Asian Herpetological Research, 5, 67–79.
    http://dx.doi.org/10.3724/SP.J.1245.2014.00067

    Zhang, P., Papenfuss, T.J., Wake, M.H., Qu, L. & Wake, D.B. (2008) Phylogeny and biogeography of the family Salamandridae (Amphibia: Caudata) inferred from complete mitochondrial genomes. Molecular Phylogenetics and Evolution, 49, 586–597.
    http://dx.doi.org/10.1016/j.ympev.2008.08.020